[gmx-users] Installing gromacs from git

[Sai Pooja]

History log:

189  ./configure --enable-threads --enable-float
--prefix=/fs/home/sm868/fftw-3.2.2
  190  make
  191  clear
  192  make install
  193  cd ..
  194  cd gromacs
  195  ls
  196  export CPPFLAGS="-I/fs/home/sm868/fftw-3.2.2/include"
  197  export LDFLAGS="-L/fs/home/sm868/fftw-3.2.2/lib"
  198  ./bootstrap
  199  ls
  200  ./configure --prefix=/fs/home/sm868/gromacs
  201  make
  202  make install

Everything works till I get the following error with make install(after it
runs for a while) :
make[3]: *** [install-man1] Error 1
make[3]: Leaving directory `/fs/home/sm868/gromacs/man/man1'
make[2]: *** [install-am] Error 2
make[2]: Leaving directory `/fs/home/sm868/gromacs/man/man1'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/fs/home/sm868/gromacs/man'
make: *** [install-recursive] Error 1

Pooja










On Sat, Jun 19, 2010 at 7:49 PM, Mark Abraham <mark.abraham at anu.edu.au>wrote:

>
>
> ----- Original Message -----
> From: Sai Pooja <saipooja at gmail.com>
> Date: Sunday, June 20, 2010 9:35
> Subject: Re: [gmx-users] Installing gromacs from git
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>
> > I am sorry that was a typo in the mail. It was set to lib
>
> That makes it hard for us to have confidence in the rest of your command
> lines - copying and pasting the results of "history" is a good way to avoid
> such problems.
>
> As such I can only suggest looking for "error" in the last 100 lines of
> config.log and seeing what you find. That, and trying it all again :-)
>
> Mark
>
>
> > On Sat, Jun 19, 2010 at 7:28 PM, Justin A. Lemkul <jalemkul at vt.edu>wrote:
>
>> >
>> >
>> > Sai Pooja wrote:
>>
>>> > Hi,
>>> >
>>> > I followed the following steps to install gromacs from the git
>>> repository:
>>> >
>>> > 1) installed git
>>> > 2) got a clone of gromacs using the anonymous option
>>> >
>>> > 3) installed fftw libraries using
>>> > ./configure --enable-float --prefix=/fs/home/sm868
>>> > make
>>> > make install
>>> >
>>> > 4)export CPPFLAGS=-I/fs/home/sm868/include
>>> >   export LDFLAGS=-L/fs/home/sm868/include
>>> >
>>> > 6)ran ./bootstrap
>>> > 7)ran ./configure --prefix=/fs/home/sm868
>>> > 8)I get the error - checking for sqrt in -lm... yes
>>> > checking for fftw3.h... yes
>>> > checking for main in -lfftw3f... no
>>> > configure: error: Cannot find fftw3f library
>>> >
>>>
>> >
>> > You set your LDFLAGS to the /include subdirectory; you want to set it
>> to the /lib subdirectory.
>> >
>> > -Justin
>>
>> >
>>
>>> > Can someone help me with this?
>>> >
>>> >
>>> > Pooja
>>> >
>>> > --
>>> > Quaerendo Invenietis-Seek and you shall discover.
>>> >
>>>
>> >
>> > --
>> > ========================================
>> >
>> > Justin A. Lemkul
>> > Ph.D. Candidate
>> > ICTAS Doctoral Scholar
>> > MILES-IGERT Trainee
>> > Department of Biochemistry
>> > Virginia Tech
>> > Blacksburg, VA
>> > jalemkul[at]vt.edu | (540) 231-9080
>> > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>> >
>> > ========================================
>> > --
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>>
> >
> >
> >
> > --
> > Quaerendo Invenietis-Seek and you shall discover.
> > --
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-- 
Quaerendo Invenietis-Seek and you shall discover.
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