[gmx-users] Installing gromacs from git

[Mark Abraham]

----- Original Message -----
From: Sai Pooja <saipooja at gmail.com>
Date: Sunday, June 20, 2010 15:09
Subject: Re: [gmx-users] Installing gromacs from git
To: Discussion list for GROMACS users <gmx-users at gromacs.org>

> History log:
> 189  ./configure --enable-threads --enable-float --prefix=/fs/home/sm868/fftw-3.2.2>   190  make>   191  clear>   192  make install>   193  cd .. >   194  cd gromacs>   195  ls>   196  export CPPFLAGS="-I/fs/home/sm868/fftw-3.2.2/include">   197  export LDFLAGS="-L/fs/home/sm868/fftw-3.2.2/lib">   198  ./bootstrap >   199  ls>   200  ./configure --prefix=/fs/home/sm868/gromacs>   201  make>   202  make install> 
> Everything works till I get the following error with make install(after it runs for a while) : > make[3]: *** [install-man1] Error 1> make[3]: Leaving directory `/fs/home/sm868/gromacs/man/man1'> make[2]: *** [install-am] Error 2> make[2]: Leaving directory `/fs/home/sm868/gromacs/man/man1' > make[1]: *** [install-recursive] Error 1> make[1]: Leaving directory `/fs/home/sm868/gromacs/man'> make: *** [install-recursive] Error 1

This is just make cleaning up after recursive invocation. The actual error is further up. Note that if configure failed according to your previous email, then there's no point to using make.

Mark

> On Sat, Jun 19, 2010 at 7:49 PM, Mark Abraham <mark.abraham at anu.edu.au> wrote:
 > 
> 
> ----- Original Message -----
> From: Sai Pooja <saipooja at gmail.com>
>  Date: Sunday, June 20, 2010 9:35
> Subject: Re: [gmx-users] Installing gromacs from git
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
 > 
> > I am sorry that was a typo in the mail. It was set to lib 
> 
> That makes it hard for us to have confidence in the rest of your command lines - copying and pasting the results of "history" is a good way to avoid such problems.
 > 
> As such I can only suggest looking for "error" in the last 100 lines of config.log and seeing what you find. That, and trying it all again :-)
> 
> Mark > 
> 
> > On Sat, Jun 19, 2010 at 7:28 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
  > > 
  > > 
> >  Sai Pooja wrote:
  > >  Hi,
  > > 
> >  I followed the following steps to install gromacs from the git repository:
  > > 
> >  1) installed git
 > >  2) got a clone of gromacs using the anonymous option
>  > 
 > >  3) installed fftw libraries using
> >  ./configure --enable-float --prefix=/fs/home/sm868
 > >  make
> >  make install
  > > 
> >  4)export CPPFLAGS=-I/fs/home/sm868/include
 > >     export LDFLAGS=-L/fs/home/sm868/include
>  > 
 > >  6)ran ./bootstrap
> >  7)ran ./configure --prefix=/fs/home/sm868
 > >  8)I get the error - checking for sqrt in -lm... yes
> >  checking for fftw3.h... yes
 > >  checking for main in -lfftw3f... no
> >  configure: error: Cannot find fftw3f library
  > > 
>   > 
 > >  You set your LDFLAGS to the /include subdirectory; you want to set it to the /lib subdirectory.
>  > 
 > >  -Justin
>  > 
  > >  Can someone help me with this?
  > > 
>  > 
 > >  Pooja
>  > 
 > >  -- 
> >  Quaerendo Invenietis-Seek and you shall discover.
  > > 
>   > 
 > >  -- 
> >  ========================================
  > > 
> >  Justin A. Lemkul
 > >  Ph.D. Candidate
> >  ICTAS Doctoral Scholar
 > >  MILES-IGERT Trainee
> >  Department of Biochemistry
 > >  Virginia Tech
> >  Blacksburg, VA
 > >  jalemkul[at]vt.edu | (540) 231-9080
>  > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
  > > 
> >  ========================================
 > >  -- 
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> >  > > 
> > -- 
 > > Quaerendo Invenietis-Seek and you shall discover.
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