[gmx-users] Topologies phosphoserine and phosphothreonine for ffamber99

[Justin A. Lemkul]

ithu wrote:
> Hi. I am trying tu run a protein under the ffamber99 force field.
> Has anyone used a topology of phosphoserine and phosphothreonine for 
> this force field?
> 

Try here:

http://www.pharmacy.manchester.ac.uk/bryce/amber#pro

Although the topologies are in AMBER format, but with some work in a text editor 
you should be able to build suitable topologies or .rtp entries.

-Justin

> Thanks,
> Esteban
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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