[gmx-users] Topologies phosphoserine and phosphothreonine for ffamber99

Justin A. Lemkul jalemkul at vt.edu
Fri May 7 00:16:27 CEST 2010

ithu wrote:
> Hi. I am trying tu run a protein under the ffamber99 force field.
> Has anyone used a topology of phosphoserine and phosphothreonine for 
> this force field?

Try here:


Although the topologies are in AMBER format, but with some work in a text editor 
you should be able to build suitable topologies or .rtp entries.


> Thanks,
> Esteban


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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