May 2010 Archives by author

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Starting: Sat May 1 02:29:28 CEST 2010
Ending: Mon May 31 23:29:51 CEST 2010
Messages: 830

[gmx-users] DSSP Nataraj B (ORLL-Biotech)
[gmx-users] Reg: Running gromacs on a condor cluster Mark Abraham
[gmx-users] electro-static potential energy after minimization Mark Abraham
[gmx-users] make_edi, g_covar -nofit Mark Abraham
[gmx-users] electro-static potential energy after minimization Mark Abraham
[gmx-users] Mac OS X with MKL Mark Abraham
[gmx-users] Lipid topologies, carving, etc Mark Abraham
[gmx-users] distances between atoms in an electrostatic interaction Mark Abraham
[gmx-users] rmsd between different monomers Mark Abraham
[gmx-users] configure error Mark Abraham
[gmx-users] gromacs Mark Abraham
[gmx-users] Force constant for position restraints Mark Abraham
[gmx-users] gromacs doubt Mark Abraham
[gmx-users] rmsd between different monomers Mark Abraham
[gmx-users] rmsd between different monomers Mark Abraham
[gmx-users] pH Mark Abraham
[gmx-users] pdb2gmx-fatal error in output file Mark Abraham
[gmx-users] Re: configure error Mark Abraham
[gmx-users] Potential Energy problem Mark Abraham
[gmx-users] Potential Energy problem Mark Abraham
[gmx-users] Wrapping molecules for octahedron box Mark Abraham
[gmx-users] luck works but demo fails Mark Abraham
[gmx-users] Domain decomposition error Mark Abraham
[gmx-users] constraints using all-angles Mark Abraham
[gmx-users] ions Mark Abraham
[gmx-users] ions Mark Abraham
[gmx-users] How to add an user-defined external potential Mark Abraham
[gmx-users] Computational Alanine Scanning Mark Abraham
[gmx-users] RMSIP (Root mean square inner products)? Mark Abraham
[gmx-users] crystallographic water to tip4p model Mark Abraham
[gmx-users] simulated annealing (SA) Mark Abraham
[gmx-users] how to define an index file Mark Abraham
[gmx-users] Using g_densmap Mark Abraham
[gmx-users] [gmx-user]Error by pdb2gmx Mark Abraham
[gmx-users] RMSIP Mark Abraham
[gmx-users] water medium Mark Abraham
[gmx-users] Re: [gmx-user]Error by pdb2gmx (Mark Abraham) Mark Abraham
[gmx-users] enegry minimisation Mark Abraham
[gmx-users] Break down of total energy Mark Abraham
[gmx-users] specifying interaction energy between residues Mark Abraham
[gmx-users] specifying interaction energy between residues Mark Abraham
[gmx-users] list of published papers Mark Abraham
[gmx-users] shake and settle Mark Abraham
[gmx-users] xtc file Mark Abraham
[gmx-users] lAM/MPI Mark Abraham
[gmx-users] Topology files for OPLSAA and RESP charges Mark Abraham
[gmx-users] tip5p in ffcharmm Mark Abraham
[gmx-users] simulation crashed because of LINCS error Mark Abraham
[gmx-users] large sim box Mark Abraham
[gmx-users] about PRODRG Mark Abraham
[gmx-users] The components on potential energy Mark Abraham
[gmx-users] tpr file Mark Abraham
[gmx-users] A question on execusion speed Mark Abraham
[gmx-users] large sim box Mark Abraham
[gmx-users] Re: the output of do_dssp Mark Abraham
[gmx-users] Non-conservation of total energy while using structure file to resume the simulation Mark Abraham
[gmx-users] Re: stepsize too small: help to solve problem in GROMACS installation Mark Abraham
[gmx-users] Non-conservation of total energy while using structure file to resume the simulation Mark Abraham
[gmx-users] Virial and Pressure Mark Abraham
[gmx-users] add missing atom Mark Abraham
[gmx-users] separation of two strands of DNA during of simulation Mark Abraham
[gmx-users] fftw library problem in gromacs installation Mark Abraham
[gmx-users] gromacs installation problem in ibm powerpc system Mark Abraham
[gmx-users] water clusters MD Mark Abraham
[gmx-users] Re: Need Help about GROMACS. Archana S Achalere
[gmx-users] Re: Need Help about GROMACS. Archana S Achalere
[gmx-users] about SHAKE, SETTLE, LINCS and double x single precision Alan
[gmx-users] Re: about SHAKE, SETTLE, LINCS and double x single precision Alan
[gmx-users] Re: OPLS-AA/L force field Alan
[gmx-users] Re: acetonitrile from amber to gromacs Alan
[gmx-users] Re: acetonitrile from amber to gromacs Alan
[gmx-users] Re: OPLS-AA/L force field Alan
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] Re: PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] PMF of ligand transport Aswathy
[gmx-users] Fwd: reproducibility of PMF plot with two different starting structures? Aswathy
[gmx-users] coarse grain dynamics Nuno Azoia
[gmx-users] Mac OS X with MKL Anthony Cruz Balberdi
[gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard Anthony Cruz Balberdi
[gmx-users] acetonitrile from amber to gromacs Anthony Cruz Balberdi
[gmx-users] adding h2po4 to system Tiago Barros
[gmx-users] Gromacs 3.3.3 segmentation fault on SLES10.2 x86_64 Xeon architecture - Intel Compilers & Intel MKL Juan Alejandro Palomino Benito
[gmx-users] Simulation explodes (protein-ligand-protein) Giovana Bergamini
[gmx-users] Simulation explodes (protein-ligand-protein) Giovana Bergamini
[gmx-users] Solvation Free Energy Calculation Emanuel Birru
[gmx-users] PLUMED release 1.2.0 available Massimiliano Bonomi
[gmx-users] energygrp_excl and grompp warning Vitaly Chaban
[gmx-users] Re: how to define an index file Vitaly Chaban
[gmx-users] Re: acetonitrile from amber to gromacs Vitaly Chaban
[gmx-users] Re: graphite and pi density Vitaly Chaban
[gmx-users] rmsd between different monomers Bharath.K. Chakravarthi
[gmx-users] genion doubt Bharath.K. Chakravarthi
[gmx-users] g_dist error? Marc Charendoff
[gmx-users] Check out my photos on Facebook Di Cheng
[gmx-users] Re: the output of do_dssp Hsin-Lin Chiang
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 177 Hsin-Lin Chiang
[gmx-users] Re: the output of do_dssp Hsin-Lin Chiang
[gmx-users] pressure for ambient water Amit Choubey
[gmx-users] pressure for ambient water Amit Choubey
[gmx-users] pressure for ambient water Amit Choubey
[gmx-users] pressure for ambient water Amit Choubey
[gmx-users] pressure for ambient water Amit Choubey
[gmx-users] reading velocity in the g_msd routine Amit Choubey
[gmx-users] Restarting after NVT: continuation error Amit Choubey
[gmx-users] gromacs doubt Chandan Choudhury
[gmx-users] template.c Chandan Choudhury
[gmx-users] question about installing gromacs on a mac Emily Curtis
[gmx-users] Mac OS X with MKL Emily Curtis
[gmx-users] Mac OS X with MKL Emily Curtis
[gmx-users] luck message and running tests Emily Curtis
[gmx-users] luck message and running tests Emily Curtis
[gmx-users] configure error Emily Curtis
[gmx-users] Re: configure error Emily Curtis
[gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard Emily Curtis
[gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard Emily Curtis
[gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard Emily Curtis
[gmx-users] luck works but demo fails Emily Curtis
[gmx-users] fep: continuation of run after lambda = 1 Evelyne Deplazes
[gmx-users] energy minimization + freeze atoms Nilesh Dhumal
[gmx-users] energy minimization + freeze atoms Nilesh Dhumal
[gmx-users] g_sdf Nilesh Dhumal
[gmx-users] g_sdf Nilesh Dhumal
[gmx-users] g_sdf Nilesh Dhumal
[gmx-users] trjconv : error Nilesh Dhumal
[gmx-users] trjconv : error Nilesh Dhumal
[gmx-users] trjconv : error Nilesh Dhumal
[gmx-users] trjconv : error Nilesh Dhumal
[gmx-users] trjconv : error Nilesh Dhumal
[gmx-users] g_spatial Nilesh Dhumal
[gmx-users] force field parameters for FeCL4 anion Nilesh Dhumal
[gmx-users] g_sdf : error Nilesh Dhumal
[gmx-users] g_sdf : error Nilesh Dhumal
[gmx-users] g_sdf : error Nilesh Dhumal
[gmx-users] g_sdf : error Nilesh Dhumal
[gmx-users] graphite and pi density Nilesh Dhumal
[gmx-users] vibrational spectra of glucose Nilesh Dhumal
[gmx-users] vibrational spectra of glucose Nilesh Dhumal
[gmx-users] vibrational spectra of glucose Nilesh Dhumal
[gmx-users] Reg: Running gromacs on a condor cluster Florian Dommert
[gmx-users] Re: box volume and solvant density Florian Dommert
[gmx-users] Non-conservation of total energy while using structure file to resume the simulation Dmitri Dubov
[gmx-users] Non-conservation of total energy while using structure file to resume the simulation Dmitri Dubov
[gmx-users] Use of restraints gives segmentation fault Anna Duncan
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 79 Anna Duncan
[gmx-users] Negative pulling forces, periodic molecules Aykut Erbas
[gmx-users] Negative pulling forces, periodic molecules Aykut Erbas
[gmx-users] Re: Negative pulling forces, periodic molecules Aykut Erbas
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 188 Aykut Erbas
[gmx-users] question about installing gromacs on a mac Esztermann, Ansgar
[gmx-users] Learning MD Rodrigo Faccioli
[gmx-users] PMF in vacuum Eudes Fileti
[gmx-users] Re: PMF in vacuum (chris.neale at utoronto.ca) Eudes Fileti
[gmx-users] DNA strands disconneting from each other along MD simulations Tanos C. C. Franca
[gmx-users] Topology files for OPLSAA and RESP charges Tanos C. C. Franca
[gmx-users] protein Aggregation using Gromacs Ran Friedman
[gmx-users] protein Aggregation using Gromacs Ran Friedman
[gmx-users] about SHAKE, SETTLE, LINCS and double x single precision Ran Friedman
[gmx-users] g_cluster, RMSD distribution Ran Friedman
[gmx-users] tip5p in ffcharmm Ramachandran G
[gmx-users] Interaction energy ANINDITA GAYEN
[gmx-users] Questions about parameters Warren Gallin
[gmx-users] Free energy and and-to-end distances Warren Gallin
[gmx-users] Constraint distance question Warren Gallin
[gmx-users] Constraint causing system to explode Warren Gallin
[gmx-users] trjconv : error Yan Gao
[gmx-users] question regarding NVT simulation Yan Gao
[gmx-users] large sim box Yan Gao
[gmx-users] How to combine two gro files in one big file Yan Gao
[gmx-users] large sim box Yan Gao
[gmx-users] How to combine two gro files in one big file Yan Gao
[gmx-users] maximum cut-off in Minimum image convention Francisco Garcia
[gmx-users] SPC/E water rdf Francisco Garcia
[gmx-users] SPC/E water RDF Francisco Garcia
[gmx-users] Hydrogen Bond Residence Time Anirban Ghosh
[gmx-users] Hydrogen Bond Residence Time Anirban Ghosh
[gmx-users] PCA component Anirban Ghosh
[gmx-users] PCA component Anirban Ghosh
[gmx-users] Selecting groups for analysis in batch submission Anirban Ghosh
[gmx-users] Selecting groups for analysis in batch submission Anirban Ghosh
[gmx-users] Selecting groups for analysis in batch submission Anirban Ghosh
[gmx-users] g_helixorient issue Anirban Ghosh
[gmx-users] g_helixorient issue Anirban Ghosh
[gmx-users] g_helixorient issue Anirban Ghosh
[gmx-users] g_bundle issue Anirban Ghosh
[gmx-users] g_bundle issue Anirban Ghosh
[gmx-users] g_bundle issue Anirban Ghosh
[gmx-users] reading velocity in the g_msd routine Gaurav Goel
[gmx-users] enegry minimisation Gaurav Goel
[gmx-users] enegry minimisation Gaurav Goel
[gmx-users] enegry minimisation Gaurav Goel
[gmx-users] xmgrace Oliver Grant
[gmx-users] Simulation explodes (protein-ligand-protein) Oliver Grant
[gmx-users] Re: OPLS-AA/L force field Oliver Grant
[gmx-users] Re: OPLS-AA/L force field Oliver Grant
[gmx-users] Re: OPLS-AA/L force field Oliver Grant
[gmx-users] Re: OPLS-AA/L force field Oliver Grant
[gmx-users] add missing atom Oliver Grant
[gmx-users] Re: Compile gromacs 4.0.7 with mopac (Stefan Hoorman) Gerrit Groenhof
[gmx-users] RE: gmx-users Digest, Vol 73, Issue 109 Ricardo Cuya Guizado
[gmx-users] RE: g_densmap Ricardo Cuya Guizado
[gmx-users] g_densmap Ricardo Cuya Guizado
[gmx-users] Learning MD V Hariharan
[gmx-users] cgnr in top file Berk Hess
[gmx-users] urea topology for MARTINI (CGMD) Esteban Gabriel Vega Hissi
[gmx-users] RE: .rtp libraries Esteban Gabriel Vega Hissi
[gmx-users] SMD pulling question Esteban Gabriel Vega Hissi
[gmx-users] coarse grain dynamics Esteban Gabriel Vega Hissi
[gmx-users] Compile gromacs 4.0.7 with mopac Stefan Hoorman
[gmx-users] Re: Compile gromacs 4.0.7 with mopac Stefan Hoorman
[gmx-users] the output of do_dssp Hsin-Lin
[gmx-users] Re: the output of do_dssp Hsin-Lin
[gmx-users] Re: the output of do_dssp Hsin-Lin
[gmx-users] confusion about segmentation fault during mdrun Lan Hua
[gmx-users] confusion about segmentation fault during mdrun Lan Hua
[gmx-users] confusion about segmentation fault during mdrun Lan Hua
[gmx-users] confusion about segmentation fault during mdrun Lan Hua
[gmx-users] confusion about segmentation fault during mdrun Lan Hua
[gmx-users] g_wham gets stuck Jochen Hub
[gmx-users] PMF profile using g_wham with pull_geometry = distance for ion channel Jochen Hub
[gmx-users] PMF profile using g_wham with pull_geometry = distance for ion channel Jochen Hub
[gmx-users] PMF profile using g_wham with pull_geometry = distance for ion channel Jochen Hub
[gmx-users] PMF of ligand transport Jochen Hub
[gmx-users] Potential Energy problem Carla Jamous
[gmx-users] Potential Energy problem Carla Jamous
[gmx-users] Essential Dynamics Carla Jamous
[gmx-users] tpr file Carla Jamous
[gmx-users] rmsd between different monomers Anupam Nath Jha
[gmx-users] rmsd between different monomers Anupam Nath Jha
[gmx-users] rmsd between different monomers Anupam Nath Jha
[gmx-users] rmsd between different monomers Anupam Nath Jha
[gmx-users] Restarting after NVT: continuation error VANDANA KUMARI
[gmx-users] How to combine two gro files in one big file VANDANA KUMARI
[gmx-users] Restarting after NVT: continuation error VANDANA KUMARI
[gmx-users] Restarting after NVT: continuation error VANDANA KUMARI
[gmx-users] rmsd between different monomers Shankar Prasad Kanaujia
[gmx-users] rmsd between different monomers Itamar Kass
[gmx-users] CG (MARTINI) parameters for RNA Itamar Kass
[gmx-users] g_cluster, RMSD distribution Michał Koliński
[gmx-users] POPC 53a6 topology (dihedral multiplicity) Kukol, Andreas
[gmx-users] POPC 53a6 topology (dihedral multiplicity) Kukol, Andreas
[gmx-users] Lipid topologies, carving, etc Kukol, Andreas
[gmx-users] RE: .rtp libraries lipids... Kukol, Andreas
[gmx-users] LJ parameters in reduced unit Nicholas Agung Kurniawan
[gmx-users] make_edi, g_covar -nofit Carsten Kutzner
[gmx-users] make_edi, g_covar -nofit Carsten Kutzner
[gmx-users] make_edi, g_covar -nofit Carsten Kutzner
[gmx-users] very low speed in simulation !( need for help) Carsten Kutzner
[gmx-users] DSSP Carsten Kutzner
[gmx-users] DSSP Carsten Kutzner
[gmx-users] template.c Jussi Lehtola
[gmx-users] mpi-run2 Jussi Lehtola
[gmx-users] G_gyrate doubt Justin A. Lemkul
[gmx-users] dssp problem Justin A. Lemkul
[gmx-users] amber 03 forcefield Justin A. Lemkul
[gmx-users] DNA strands disconneting from each other along MD simulations Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] simple question about rtp and pdb file Justin A. Lemkul
[gmx-users] Help for running gromacs Justin A. Lemkul
[gmx-users] Help for running gromacs Justin A. Lemkul
[gmx-users] cgnr in top file Justin A. Lemkul
[gmx-users] cgnr in top file Justin A. Lemkul
[gmx-users] electrostatic interactions Justin A. Lemkul
[gmx-users] Unneccessary bonding Justin A. Lemkul
[gmx-users] electrostatic interactions Justin A. Lemkul
[gmx-users] Unneccessary bonding Justin A. Lemkul
[gmx-users] trjconv => -[no]vel => print out the velocity ? Justin A. Lemkul
[gmx-users] the problem of the periodic boundary Justin A. Lemkul
[gmx-users] electro-static potential energy after minimization Justin A. Lemkul
[gmx-users] electro-static potential energy after minimization Justin A. Lemkul
[gmx-users] electro-static potential energy after minimization Justin A. Lemkul
[gmx-users] Mac OS X with MKL Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] luck message and running tests Justin A. Lemkul
[gmx-users] Re: Extending MD run Justin A. Lemkul
[gmx-users] Re: Density Justin A. Lemkul
[gmx-users] Topologies phosphoserine and phosphothreonine for ffamber99 Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] how to show structure results in Martini coarse-grained simulation? Justin A. Lemkul
[gmx-users] Generating topology with pdb2gmx Justin A. Lemkul
[gmx-users] rmsd between different monomers Justin A. Lemkul
[gmx-users] rmsd between different monomers Justin A. Lemkul
[gmx-users] rmsd between different monomers Justin A. Lemkul
[gmx-users] problem with pdb2gmx to generate top file Justin A. Lemkul
[gmx-users] confusion about trjconv Justin A. Lemkul
[gmx-users] problem with pdb2gmx to generate top file Justin A. Lemkul
[gmx-users] pdb2gmx-fatal error in output file Justin A. Lemkul
[gmx-users] PMF of ligand transport Justin A. Lemkul
[gmx-users] rigidn or flexible water models Justin A. Lemkul
[gmx-users] PMF of ligand transport Justin A. Lemkul
[gmx-users] PMF of ligand transport Justin A. Lemkul
[gmx-users] rigid or flexible water models Justin A. Lemkul
[gmx-users] naive question about the c-terminus Justin A. Lemkul
[gmx-users] PMF of ligand transport Justin A. Lemkul
[gmx-users] naive question about the c-terminus Justin A. Lemkul
[gmx-users] naive question about the c-terminus Justin A. Lemkul
[gmx-users] Re: PMF of ligand transport Justin A. Lemkul
[gmx-users] Re: PMF of ligand transport Justin A. Lemkul
[gmx-users] Learning MD Justin A. Lemkul
[gmx-users] g_dist error? Justin A. Lemkul
[gmx-users] non zero charge in topolgy Justin A. Lemkul
[gmx-users] PME grid spacing Justin A. Lemkul
[gmx-users] g_sdf Justin A. Lemkul
[gmx-users] g_sdf Justin A. Lemkul
[gmx-users] trjconv : error Justin A. Lemkul
[gmx-users] energy_increase_NVE_run Justin A. Lemkul
[gmx-users] NMR and X-ray structures Justin A. Lemkul
[gmx-users] trjconv : error Justin A. Lemkul
[gmx-users] trjconv : error Justin A. Lemkul
[gmx-users] trjconv : error Justin A. Lemkul
[gmx-users] trjconv : error Justin A. Lemkul
[gmx-users] energy_increase_NVE_run Justin A. Lemkul
[gmx-users] building stacks with a desired system density Justin A. Lemkul
[gmx-users] gromacs doubt Justin A. Lemkul
[gmx-users] gromacs doubt Justin A. Lemkul
[gmx-users] rerun trajectory does not match input file Justin A. Lemkul
[gmx-users] rerun trajectory does not match input file Justin A. Lemkul
[gmx-users] Use of restraints gives segmentation fault Justin A. Lemkul
[gmx-users] g_spatial Justin A. Lemkul
[gmx-users] genconf and density of system Justin A. Lemkul
[gmx-users] Simulation explodes (protein-ligand-protein) Justin A. Lemkul
[gmx-users] luck works but demo fails Justin A. Lemkul
[gmx-users] combine two gro into one Justin A. Lemkul
[gmx-users] combine two gro into one Justin A. Lemkul
[gmx-users] Fatal error: moleculetype CU1+ is redefined Justin A. Lemkul
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 77 (was: gromacs doubt) Justin A. Lemkul
[gmx-users] force field parameters for FeCL4 anion Justin A. Lemkul
[gmx-users] 3 particles communicated to PME node 7 are more than a cell length out of the domain decomposition cell of their charge group Justin A. Lemkul
[gmx-users] How to interpret MD results Justin A. Lemkul
[gmx-users] water atom locations from genbox Justin A. Lemkul
[gmx-users] water atom locations from genbox Justin A. Lemkul
[gmx-users] SMD pulling question Justin A. Lemkul
[gmx-users] trjcat settime Justin A. Lemkul
[gmx-users] SMD pulling question Justin A. Lemkul
[gmx-users] SMD pulling question Justin A. Lemkul
[gmx-users] genion doubt Justin A. Lemkul
[gmx-users] genion doubt Justin A. Lemkul
[gmx-users] pressure for ambient water Justin A. Lemkul
[gmx-users] pressure for ambient water Justin A. Lemkul
[gmx-users] Domain decomposition error Justin A. Lemkul
[gmx-users] Domain decomposition error Justin A. Lemkul
[gmx-users] pressure for ambient water Justin A. Lemkul
[gmx-users] PMF of ligand transport Justin A. Lemkul
[gmx-users] About wiki error Justin A. Lemkul
[gmx-users] interaction parameter-polymer solution system Justin A. Lemkul
[gmx-users] pressure for ambient water Justin A. Lemkul
[gmx-users] Re: Need Help about GROMACS. Justin A. Lemkul
[gmx-users] Total energy -decomposed terms Justin A. Lemkul
[gmx-users] Gromacs test sets Justin A. Lemkul
[gmx-users] minimizing ligand only Justin A. Lemkul
[gmx-users] OPLS-AA/L force field Justin A. Lemkul
[gmx-users] Selecting groups for analysis in batch submission Justin A. Lemkul
[gmx-users] water medium Justin A. Lemkul
[gmx-users] Re: minimizing ligand only Justin A. Lemkul
[gmx-users] DSSP Justin A. Lemkul
[gmx-users] DSSP Justin A. Lemkul
[gmx-users] Re: Need Help about GROMACS. Justin A. Lemkul
[gmx-users] DSSP Justin A. Lemkul
[gmx-users] Re: Need Help about GROMACS. Justin A. Lemkul
[gmx-users] energygrp_excl and grompp warning Justin A. Lemkul
[gmx-users] Re: how to define an index file Justin A. Lemkul
[gmx-users] problem with index file Justin A. Lemkul
[gmx-users] Re: water medium Justin A. Lemkul
[gmx-users] Re: OPLS-AA/L force field Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] Re: OPLS-AA/L force field Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] Re: OPLS-AA/L force field Justin A. Lemkul
[gmx-users] weird problem about editconf and genbox Justin A. Lemkul
[gmx-users] confusion about segmentation fault during mdrun Justin A. Lemkul
[gmx-users] energy break down Justin A. Lemkul
[gmx-users] confusion about segmentation fault during mdrun Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] confusion about segmentation fault during mdrun Justin A. Lemkul
[gmx-users] breaking down total energy Justin A. Lemkul
[gmx-users] Charge assignment Justin A. Lemkul
[gmx-users] adding constraints Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] Re: OPLS-AA/L force field Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] enegry minimisation Justin A. Lemkul
[gmx-users] mdrun segmentation fault Justin A. Lemkul
[gmx-users] mdrun segmentation fault Justin A. Lemkul
[gmx-users] confusion about segmentation fault during mdrun Justin A. Lemkul
[gmx-users] Re: OPLS-AA/L force field Justin A. Lemkul
[gmx-users] the output of do_dssp Justin A. Lemkul
[gmx-users] rerun trajectory does not match input file Justin A. Lemkul
[gmx-users] rerun trajectory does not match input file Justin A. Lemkul
[gmx-users] Re: OPLS-AA/L force field Justin A. Lemkul
[gmx-users] xtc file Justin A. Lemkul
[gmx-users] polymer-topology generation Justin A. Lemkul
[gmx-users] Polymer simulation help and suggestions Justin A. Lemkul
[gmx-users] tpbconv subset Justin A. Lemkul
[gmx-users] tpbconv subset Justin A. Lemkul
[gmx-users] Polymer simulation help and suggestions Justin A. Lemkul
[gmx-users] energy.edr retrieves deltaG = 0 KJ/mol using g_lie Justin A. Lemkul
[gmx-users] simulation crashed because of LINCS error Justin A. Lemkul
[gmx-users] do_dssp Justin A. Lemkul
[gmx-users] energy.edr retrieves deltaG = 0 KJ/mol using g_lie Justin A. Lemkul
[gmx-users] stepsize too small ... but potential energy negative! Justin A. Lemkul
[gmx-users] Re: Density question Justin A. Lemkul
[gmx-users] Re: stepsize too small ... but potential energy negative! Justin A. Lemkul
[gmx-users] do_dssp Justin A. Lemkul
[gmx-users] do_dssp Justin A. Lemkul
[gmx-users] question about Gromacs4.0.7: parallel run Justin A. Lemkul
[gmx-users] tpbconv subset Justin A. Lemkul
[gmx-users] Re: the output of do_dssp Justin A. Lemkul
[gmx-users] Re: stepsize too small ... but potential energ negative! Justin A. Lemkul
[gmx-users] The components on potential energy Justin A. Lemkul
[gmx-users] about PRODRG Justin A. Lemkul
[gmx-users] tpr file Justin A. Lemkul
[gmx-users] coarse grain dynamics Justin A. Lemkul
[gmx-users] coarse grain dynamics Justin A. Lemkul
[gmx-users] A question on execusion speed Justin A. Lemkul
[gmx-users] Restarting after NVT: continuation error Justin A. Lemkul
[gmx-users] How to combine two gro files in one big file Justin A. Lemkul
[gmx-users] How to combine two gro files in one big file Justin A. Lemkul
[gmx-users] stepsize too small: help to solve problem in GROMACS installation Justin A. Lemkul
[gmx-users] Re: the output of do_dssp Justin A. Lemkul
[gmx-users] maximum cut-off in Minimum image convention Justin A. Lemkul
[gmx-users] Re: the output of do_dssp Justin A. Lemkul
[gmx-users] analysis of md run results Justin A. Lemkul
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 177 Justin A. Lemkul
[gmx-users] coinstraint bond length changes Justin A. Lemkul
[gmx-users] vibrational spectra of glucose Justin A. Lemkul
[gmx-users] OPLS-AA forcefield Justin A. Lemkul
[gmx-users] OPLS-AA forcefield Justin A. Lemkul
[gmx-users] XTC Error!!! Justin A. Lemkul
[gmx-users] analysis of MD energy terms Justin A. Lemkul
[gmx-users] g_sas Justin A. Lemkul
[gmx-users] RE: [gmx-user]Error by pdb2gmx (Dallas Justin A. Lemkul
[gmx-users] Re: Negative pulling forces, periodic molecules Justin A. Lemkul
[gmx-users] how to position restraint COM of clusters? Justin A. Lemkul
[gmx-users] separation of two strands of DNA during of simulation Justin A. Lemkul
[gmx-users] mpi-run Justin A. Lemkul
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 193 (mpi-run) Justin A. Lemkul
[gmx-users] box volume and solvant density Justin A. Lemkul
[gmx-users] box volume and solvant density Justin A. Lemkul
[gmx-users] Re: mpi-run2 Justin A. Lemkul
[gmx-users] Re: box volume and solvant density Justin A. Lemkul
[gmx-users] Simulation explodes (protein-ligand-protein) Justin A. Lemkul
[gmx-users] trjconv => -[no]vel => print out the velocity ? Chih-Ying Lin
[gmx-users] How to add an user-defined external potential Sanku M
[gmx-users] gromacs installation problem in ibm powerpc system Sanku M
[gmx-users] Computational Alanine Scanning Binh Khanh Mai
[gmx-users] minimizing ligand only Anna Marabotti
[gmx-users] Re: minimizing ligand only Anna Marabotti
[gmx-users] stepsize too small ... but potential energy negative! Anna Marabotti
[gmx-users] stepsize too small ... but potential energy negative! Anna Marabotti
[gmx-users] Re: stepsize too small ... but potential energy negative! Anna Marabotti
[gmx-users] Re: stepsize too small ... but potential energ negative! Anna Marabotti
[gmx-users] Re: stepsize too small ... but potential energy negative! Anna Marabotti
[gmx-users] Re: stepsize too small ... but potential energy negative! Anna Marabotti
[gmx-users] stepsize too small: help to solve problem in GROMACS installation Anna Marabotti
[gmx-users] Re: stepsize too small: help to solve problem in GROMACS installation Anna Marabotti
[gmx-users] Re: stepsize too small: help to solve problem in GROMACS installation Anna Marabotti
[gmx-users] g_wham gets stuck Amir Marcovitz
[gmx-users] Help for running gromacs Erik Marklund
[gmx-users] cgnr in top file Erik Marklund
[gmx-users] cgnr in top file Erik Marklund
[gmx-users] cgnr in top file Erik Marklund
[gmx-users] cgnr in top file Erik Marklund
[gmx-users] Hydrogen Bond Residence Time Erik Marklund
[gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard Erik Marklund
[gmx-users] Learning MD Erik Marklund
[gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard Erik Marklund
[gmx-users] making index file Erik Marklund
[gmx-users] enegry minimisation Erik Marklund
[gmx-users] enegry minimisation Erik Marklund
[gmx-users] energy decreasing in NVE simulation Erik Marklund
[gmx-users] Query regarding g_rmsf and g_hbond Erik Marklund
[gmx-users] vibrational spectra of glucose Erik Marklund
[gmx-users] vibrational spectra of glucose Erik Marklund
[gmx-users] vibrational spectra of glucose Erik Marklund
[gmx-users] OPLS-AA forcefield Erik Marklund
[gmx-users] 3 particles communicated to PME node 7 are more than a cell length out of the domain decomposition cell of their charge group Joanne Martin
[gmx-users] combine two gro into one Sikandar Mashayak
[gmx-users] combine two gro into one Sikandar Mashayak
[gmx-users] water atom locations from genbox Sikandar Mashayak
[gmx-users] water atom locations from genbox Sikandar Mashayak
[gmx-users] mdrun segmentation fault Sikandar Mashayak
[gmx-users] mdrun segmentation fault Sikandar Mashayak
[gmx-users] Charge assignment Michael McGovern
[gmx-users] Many-Core CPU/GPU Summer School (With NVIDIA Developers) Nuno Micaelo
[gmx-users] Help for running gromacs Krzysztof Mlynarczyk
[gmx-users] simple question about rtp and pdb file Moeed
[gmx-users] Generating topology with pdb2gmx Moeed
[gmx-users] problem with pdb2gmx to generate top file Moeed
[gmx-users] pdb2gmx-fatal error in output file Moeed
[gmx-users] non zero charge in topolgy Moeed
[gmx-users] PME grid spacing Moeed
[gmx-users] building stacks with a desired system density Moeed
[gmx-users] genconf and density of system Moeed
[gmx-users] How to interpret MD results Moeed
[gmx-users] interaction parameter-polymer solution system Moeed
[gmx-users] Total energy -decomposed terms Moeed
[gmx-users] making index file Moeed
[gmx-users] how to define an index file Moeed
[gmx-users] problem with index file Moeed
[gmx-users] energy break down Moeed
[gmx-users] breaking down total energy Moeed
[gmx-users] Break down of total energy Moeed
[gmx-users] xtc file Moeed
[gmx-users] analysis of md run results Moeed
[gmx-users] analysis of MD energy terms Moeed
[gmx-users] urea topology for MARTINI (CGMD) Luca Mollica
[gmx-users] urea topology for MARTINI (CGMD) Luca Mollica
[gmx-users] asking help for simulation of protein in 8M urea Luca Mollica
[gmx-users] Essential Dynamics Luca Mollica
[gmx-users] Essential Dynamics Luca Mollica
[gmx-users] stepsize too small ... but potential energy negative! Luca Mollica
[gmx-users] stepsize too small ... but potential energy negative! Luca Mollica
[gmx-users] stepsize too small ... but potential energy negative! Luca Mollica
[gmx-users] stepsize too small ... but potential energy negative! Luca Mollica
[gmx-users] polymer-topology generation P.R.Anand Narayanan
[gmx-users] PMF of ligand transport Chris Neale
[gmx-users] PMF of ligand transport Chris Neale
[gmx-users] Gromacs test sets Efrat Noy
[gmx-users] Re.: genion doubt (manjula kasinathan) Jessé Nóbrega
[gmx-users] water clusters MD Oleksandr
[gmx-users] Wrapping molecules for octahedron box Rafael Rodríguez Pappalardo
[gmx-users] constraints using all-angles Sang-Won Park
[gmx-users] Re: constraints using all-angles Sang-Won Park
[gmx-users] question about Gromacs4.0.7: parallel run Yi Peng
[gmx-users] question about Gromacs4.0.7: parallel run Yi Peng
[gmx-users] Unneccessary bonding XAvier Periole
[gmx-users] Unneccessary bonding XAvier Periole
[gmx-users] Unneccessary bonding XAvier Periole
[gmx-users] Unneccessary bonding XAvier Periole
[gmx-users] electrostatic interactions XAvier Periole
[gmx-users] POPC 53a6 topology (dihedral multiplicity) XAvier Periole
[gmx-users] electrostatic interactions XAvier Periole
[gmx-users] confusion about trjconv XAvier Periole
[gmx-users] rigid or flexible water models XAvier Periole
[gmx-users] PMF of ligand transport XAvier Periole
[gmx-users] ELNEDIN disulfide bridge XAvier Periole
[gmx-users] ELNEDIN disulfide bridge XAvier Periole
[gmx-users] MARTINI protonated histidine XAvier Periole
[gmx-users] naive question about the c-terminus XAvier Periole
[gmx-users] electro-static interaction not made XAvier Periole
[gmx-users] urea topology for MARTINI (CGMD) XAvier Periole
[gmx-users] urea topology for MARTINI (CGMD) XAvier Periole
[gmx-users] Use of restraints gives segmentation fault XAvier Periole
[gmx-users] Use of restraints gives segmentation fault XAvier Periole
[gmx-users] mdp file XAvier Periole
[gmx-users] gen_vel XAvier Periole
[gmx-users] OPLS benzene issue Jeffery Perkins
[gmx-users] PMF profile using g_wham with pull_geometry = distance for ion channel Thomas Piggot
[gmx-users] PMF profile using g_wham with pull_geometry = distance for ion channel Thomas Piggot
[gmx-users] PMF profile using g_wham with pull_geometry = distance for ion channel Thomas Piggot
[gmx-users] PMF of ligand transport Thomas Piggot
[gmx-users] g_bundle issue Thomas Piggot
[gmx-users] CG (MARTINI) parameters for RNA Thomas Piggot
[gmx-users] combine two gro into one Tom Piggot
[gmx-users] A question on execusion speed Paymon Pirzadeh
[gmx-users] specifying interaction energy between residues Gene Polovy
[gmx-users] specifying interaction energy between residues Gene Polovy
[gmx-users] Wrapping molecules for octahedron box Sai Kumar Ramadugu
[gmx-users] Visualization of my trajectories in PyMol Maurício Menegatti Rigo
[gmx-users] Visualization of trajectories in PyMol Maurício Menegatti Rigo
[gmx-users] question about installing gromacs on a mac J. Rui Rodrigues
[gmx-users] acetonitrile from amber to gromacs J. Rui Rodrigues
[gmx-users] ADP topologies for OPLS Ernesto Andres Román
[gmx-users] energy_increase_NVE_run Durba Roy
[gmx-users] energy_increase_NVE_run Durba Roy
[gmx-users] polymer simulation Sudip Roy
[gmx-users] issue with nsteps DAVID DE SANCHO
[gmx-users] Topology files for OPLSAA and RESP charges Nicolas Sapay
[gmx-users] Re: PMF of ligand transport Thomas Schlesier
[gmx-users] Re: PMF of ligand transport Thomas Schlesier
[gmx-users] Re: genconf and density of system Thomas Schlesier
[gmx-users] Re: minimizing ligand only Thomas Schlesier
[gmx-users] Re: water medium Thomas Schlesier
[gmx-users] Re: Negative pulling forces, periodic molecules Thomas Schlesier
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 188 Thomas Schlesier
[gmx-users] Re: python wrapper from libxdr? Roland Schulz
[gmx-users] Re: python wrapper from libxdr? Roland Schulz
[gmx-users] energy.edr retrieves deltaG = 0 KJ/mol using g_lie Hassan Shallal
[gmx-users] energy.edr retrieves deltaG = 0 KJ/mol using g_lie Hassan Shallal
[gmx-users] rerun trajectory does not match input file John Shultz
[gmx-users] rerun trajectory does not match input file John Shultz
[gmx-users] rerun trajectory does not match input file John Shultz
[gmx-users] rerun trajectory does not match input file John Shultz
[gmx-users] rerun trajectory does not match input file John Shultz
[gmx-users] tpbconv subset John Shultz
[gmx-users] tpbconv subset John Shultz
[gmx-users] tpbconv subset John Shultz
[gmx-users] Optimal Hardware for Gromacs Alexey Shvetsov
[gmx-users] Optimal Hardware for Gromacs Alexey Shvetsov
[gmx-users] POPC 53a6 topology (dihedral multiplicity) Alex Smolyanitsky
[gmx-users] POPC 53a6 topology (dihedral multiplicity) Alex Smolyanitsky
[gmx-users] POPC 53a6 topology (dihedral multiplicity) Alex Smolyanitsky
[gmx-users] Lipid topologies, carving, etc Alex Smolyanitsky
[gmx-users] Lipid topologies, carving, etc Alex Smolyanitsky
[gmx-users] Optimal Hardware for Gromacs David van der Spoel
[gmx-users] issue with nsteps David van der Spoel
[gmx-users] error in hydrocarbon dihedrals of opls-aa? David van der Spoel
[gmx-users] PCA component David van der Spoel
[gmx-users] OPLS benzene issue David van der Spoel
[gmx-users] adding h2po4 to system David van der Spoel
[gmx-users] RE: .rtp libraries lipids... David van der Spoel
[gmx-users] g_clustsize output David van der Spoel
[gmx-users] g_clustsize output David van der Spoel
[gmx-users] list of published papers David van der Spoel
[gmx-users] Gromacs 3.3.3 segmentation fault on SLES10.2 x86_64 Xeon architecture - Intel Compilers & Intel MKL David van der Spoel
[gmx-users] separation of two strands of DNA during of simulation David van der Spoel
[gmx-users] the direction of Electric fields in GROMACS? David van der Spoel
[gmx-users] g_analyze negative Jacob Spooner
[gmx-users] how to position restraint COM of clusters? XUEMING TANG
[gmx-users] Fwd: how to position restraint COM of clusters? XUEMING TANG
[gmx-users] how to position restraint COM of clusters? XUEMING TANG
[gmx-users] electro-static potential energy after minimization Jared James Thompson
[gmx-users] coarse grain dynamics Jared James Thompson
[gmx-users] coarse grain dynamics Jared James Thompson
[gmx-users] MARTINI protonated histidine Lea Thøgersen
[gmx-users] ELNEDIN disulfide bridge Lea Thøgersen
[gmx-users] Polymer simulation help and suggestions Caleb Tormey
[gmx-users] Polymer simulation help and suggestions Caleb Tormey
[gmx-users] error in hydrocarbon dihedrals of opls-aa? Markus Tusch
[gmx-users] error in hydrocarbon dihedrals of opls-aa? Markus Tusch
[gmx-users] Fatal error: moleculetype CU1+ is redefined George Tzotzos
[gmx-users] Computational Alanine Scanning Lucio Ricardo Montero Valenzuela
[gmx-users] about PRODRG Lucio Ricardo Montero Valenzuela
[gmx-users] coinstraint bond length changes Sebastian Waltz
[gmx-users] umbrella sampling Qian Wang
[gmx-users] non zero charge in topolgy Dallas B. Warren
[gmx-users] g_sdf : error Dallas B. Warren
[gmx-users] g_sdf : error Dallas B. Warren
[gmx-users] g_sdf : error Dallas B. Warren
[gmx-users] enegry minimisation Dallas B. Warren
[gmx-users] polymer simulation Dallas B. Warren
[gmx-users] [gmx-user]Error by pdb2gmx Dallas B. Warren
[gmx-users] PCA component Tsjerk Wassenaar
[gmx-users] Trj conversion: ABCXYZ to AXBYCZ Tsjerk Wassenaar
[gmx-users] Trj conversion: ABCXYZ to AXBYCZ Tsjerk Wassenaar
[gmx-users] Wrapping molecules for octahedron box Tsjerk Wassenaar
[gmx-users] RE: .rtp libraries Tsjerk Wassenaar
[gmx-users] RMSIP Tsjerk Wassenaar
[gmx-users] asking help for simulation of protein in 8M urea Tsjerk Wassenaar
[gmx-users] Re: Re: energy decreasing in NVE simulation Tsjerk Wassenaar
[gmx-users] PCA Tsjerk Wassenaar
[gmx-users] template.c Tsjerk Wassenaar
[gmx-users] weird problem about editconf and genbox Lin Xu
[gmx-users] energy decreasing in NVE simulation Yun-an Yan
[gmx-users] Re: Re: energy decreasing in NVE simulation Yan Yun-an
[gmx-users] python wrapper from libxdr? BIN ZHANG
[gmx-users] Re: python wrapper from libxdr? BIN ZHANG
[gmx-users] implicit solvent in CVS BIN ZHANG
[gmx-users] About wiki error Cun Zhang
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 98 Cun Zhang
[gmx-users] very low speed in simulation !( need for help) delara aghaie
[gmx-users] lAM/MPI delara aghaie
[gmx-users] Unneccessary bonding abdullah ahmed
[gmx-users] Unneccessary bonding abdullah ahmed
[gmx-users] electrostatic interactions abdullah ahmed
[gmx-users] Unneccessary bonding abdullah ahmed
[gmx-users] Unneccessary bonding abdullah ahmed
[gmx-users] electrostatic interactions abdullah ahmed
[gmx-users] electrostatic interactions abdullah ahmed
[gmx-users] electrostatic interactions abdullah ahmed
[gmx-users] electro-static potential energy after minimization abdullah ahmed
[gmx-users] electro-static potential energy after minimization abdullah ahmed
[gmx-users] electro-static potential energy after minimization abdullah ahmed
[gmx-users] electro-static potential energy after minimization abdullah ahmed
[gmx-users] distances between atoms in an electrostatic interaction abdullah ahmed
[gmx-users] naive question about the c-terminus abdullah ahmed
[gmx-users] naive question about the c-terminus abdullah ahmed
[gmx-users] naive question about the c-terminus abdullah ahmed
[gmx-users] naive question about the c-terminus abdullah ahmed
[gmx-users] electro-static interaction not made abdullah ahmed
[gmx-users] The components on potential energy abdullah ahmed
[gmx-users] trjconv : error gigitang5 at aol.fr
[gmx-users] Virial and Pressure hong bingbing
[gmx-users] coarse grain dynamics ram bio
[gmx-users] coarse grain dynamics ram bio
[gmx-users] coarse grain dynamics ram bio
[gmx-users] coarse grain dynamics ram bio
[gmx-users] Learning MD sonali dhindwal
[gmx-users] Learning MD sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] enegry minimisation sonali dhindwal
[gmx-users] simulation crashed because of LINCS error sonali dhindwal
[gmx-users] simulation crashed because of LINCS error sonali dhindwal
[gmx-users] acetonitrile from amber to gromacs vedat durmaz
[gmx-users] Re: acetonitrile from amber to gromacs vedat durmaz
[gmx-users] list of published papers milad ekramnia
[gmx-users] about PRODRG fancy2012
[gmx-users] domain decomposition irene farabella
[gmx-users] box volume and solvant density grivet
[gmx-users] Re: box volume and solvant density grivet
[gmx-users] asking help for simulation of protein in 8M urea caty hacker
[gmx-users] Topologies phosphoserine and phosphothreonine for ffamber99 ithu
[gmx-users] cgnr in top file leila karami
[gmx-users] cgnr in top file leila karami
[gmx-users] cgnr in top file leila karami
[gmx-users] gromacs manjula kasinathan
[gmx-users] gromacs doubt manjula kasinathan
[gmx-users] gromacs doubt manjula kasinathan
[gmx-users] gromacs doubt manjula kasinathan
[gmx-users] Re: gmx-users Digest, Vol 73, Issue 77 manjula kasinathan
[gmx-users] genion doubt manjula kasinathan
[gmx-users] Re: configure error lina
[gmx-users] Re: Help, Errors while compiling gromacs under Mac OS X 10.5 lina
[gmx-users] Solvation free energy afsaneh maleki
[gmx-users] Trj conversion: ABCXYZ to AXBYCZ nahren manuel
[gmx-users] Trj conversion: ABCXYZ to AXBYCZ nahren manuel
[gmx-users] Trj conversion: ABCXYZ to AXBYCZ nahren manuel
[gmx-users] fftw library problem in gromacs installation jagannath mondal
[gmx-users] Learning MD ms
[gmx-users] mpi-run nanogroup
[gmx-users] mpi-run2 nanogroup
[gmx-users] confusion about trjconv shahid nayeem
[gmx-users] protein Aggregation using Gromacs shahid nayeem
[gmx-users] protein Aggregation using Gromacs shahid nayeem
[gmx-users] xmgrace shahid nayeem
[gmx-users] DSSP shahid nayeem
[gmx-users] DSSP shahid nayeem
[gmx-users] DSSP shahid nayeem
[gmx-users] do_dssp shahid nayeem
[gmx-users] do_dssp shahid nayeem
[gmx-users] do_dssp shahid nayeem
[gmx-users] g_sas shahid nayeem
[gmx-users] Help for running gromacs priyanka panwar
[gmx-users] Help for running gromacs priyanka panwar
[gmx-users] Help for running gromacs priyanka panwar
[gmx-users] Help for running gromacs priyanka panwar
[gmx-users] Help for running gromacs priyanka panwar
[gmx-users] Help for running gromacs shayamra at post.tau.ac.il
[gmx-users] Phosphorylation of protein rituraj purohit
[gmx-users] Query regarding g_rmsf and g_hbond rituraj purohit
[gmx-users] dssp problem pawan raghav
[gmx-users] pH pawan raghav
[gmx-users] RMSIP (Root mean square inner products)? pawan raghav
[gmx-users] PCA pawan raghav
[gmx-users] RMSIP pawan raghav
[gmx-users] PCA pawan raghav
[gmx-users] RE: .rtp libraries lloyd riggs
[gmx-users] RE: .rtp libraries lipids... lloyd riggs
[gmx-users] RE:Missing atoms lloyd riggs
[gmx-users] XTC Error!!! deisy yurley rodriguez sarmiento
[gmx-users] amber 03 forcefield shahab shariati
[gmx-users] Force constant for position restraints shahab shariati
[gmx-users] rigidn or flexible water models shahab shariati
[gmx-users] rigid or flexible water models shahab shariati
[gmx-users] NMR and X-ray structures shahab shariati
[gmx-users] mdp file shahab shariati
[gmx-users] gen_vel shahab shariati
[gmx-users] simulated annealing (SA) shahab shariati
[gmx-users] separation of two strands of DNA during of simulation shahab shariati
[gmx-users] separation of two strands of DNA during of simulation shahab shariati
[gmx-users] the problem of the periodic boundary kecy_wu at sina.com
[gmx-users] domain decomposition jampani srinivas
[gmx-users] make_edi, g_covar -nofit vijaya subramanian
[gmx-users] make_edi, g_covar -nofit vijaya subramanian
[gmx-users] make_edi, g_covar -nofit vijaya subramanian
[gmx-users] ions tahereh tekieh
[gmx-users] ions tahereh tekieh
[gmx-users] water medium tahereh tekieh
[gmx-users] water medium tahereh tekieh
[gmx-users] Re: water medium tahereh tekieh
[gmx-users] adding constraints subarna thakur
[gmx-users] shake and settle subarna thakur
[gmx-users] Extending MD run teklebrh at ualberta.ca
[gmx-users] Re: Density teklebrh at ualberta.ca
[gmx-users] Density question teklebrh at ualberta.ca
[gmx-users] g_clustsize output toma0052 at umn.edu
[gmx-users] g_clustsize output toma0052 at umn.edu
[gmx-users] Re: PMF profile using g_wham with pull_geometry = distance for ion channel chris.neale at utoronto.ca
[gmx-users] PMF of ligand transport chris.neale at utoronto.ca
[gmx-users] non zero charge in topolgy chris.neale at utoronto.ca
[gmx-users] PMF of ligand transport chris.neale at utoronto.ca
[gmx-users] SMD pulling question chris.neale at utoronto.ca
[gmx-users] SMD pulling question chris.neale at utoronto.ca
[gmx-users] reproducibility of PMF plot with two different starting structures chris.neale at utoronto.ca
[gmx-users] PMF in vacuum chris.neale at utoronto.ca
[gmx-users] PMF in vacuum chris.neale at utoronto.ca
[gmx-users] Constraint causing system to explode chris.neale at utoronto.ca
[gmx-users] Negative pulling forces, periodic molecules chris.neale at utoronto.ca
[gmx-users] umbrella sampling chris.neale at utoronto.ca
[gmx-users] add missing atom chris.neale at utoronto.ca
[gmx-users] SPC/E water RDF chris.neale at utoronto.ca
[gmx-users] Solvation Free Energy Calculation chris.neale at utoronto.ca
[gmx-users] trjcat settime nishap.patel at utoronto.ca
[gmx-users] Domain decomposition error nishap.patel at utoronto.ca
[gmx-users] Domain decomposition error nishap.patel at utoronto.ca
[gmx-users] Domain decomposition error nishap.patel at utoronto.ca
[gmx-users] how to show structure results in Martini coarse-grained simulation? xi zhao
[gmx-users] how to show structure results in Martini coarse-grained simulation? xi zhao
[gmx-users] how to show structure results in Martini coarse-grained simulation? xi zhao
[gmx-users] how to show structure results in Martini coarse-grained simulation? xi zhao
[gmx-users] how to show structure results in Martini coarse-grained simulation? xi zhao
[gmx-users] how to show structure results in Martini coarse-grained simulation? xi zhao
[gmx-users] the direction of Electric fields in GROMACS? zhongjin
[gmx-users] acetonitrile from amber to gromacs durmaz at zib.de
[gmx-users] OPLS-AA/L force field you zou
[gmx-users] Re: OPLS-AA/L force field you zou
[gmx-users] Re: OPLS-AA/L force field you zou
[gmx-users] Re: OPLS-AA/L force field you zou
[gmx-users] Re: OPLS-AA/L force field you zou
[gmx-users] OPLS-AA forcefield you zou
[gmx-users] add missing atom you zou
[gmx-users] crystallographic water to tip4p model Павел Кудрявцев
[gmx-users] Re: Re: crystallographic water to tip4p model Павел Кудрявцев
[gmx-users] 转发: [gmx-user]Error by pdb2gmx 佘安奇
[gmx-users] [gmx-user]Error by pdb2gmx 佘安奇
[gmx-users] Re: [gmx-user]Error by pdb2gmx (Mark Abraham) 佘安奇
[gmx-users] [gmx-user]Error by pdb2gmx 佘安奇
[gmx-users] RE: [gmx-user]Error by pdb2gmx (Dallas 佘安奇
[gmx-users] Re:[gmx-user]Error by pdb2gmx( Dallas B. Warren) 佘安奇

Last message date: Mon May 31 23:29:51 CEST 2010
Archived on: Thu Nov 14 12:08:42 CET 2013

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