[gmx-users] Visualization of my trajectories in PyMol
Maurício Menegatti Rigo
mauriciomr1985 at gmail.com
Mon May 10 04:39:35 CEST 2010
I'm performing a 10 ns molecular dynamics of a homodimer, using GROMACS. I
have no problems during and after the simulation, since I have already
analyzed the log files and performed the checking. I was able to see,
without any problems, the whole concatenated trajectory file with VMD
software. However, when I tried to visualize with PyMol, occurs some
problems in the last frames, like wrong bonds and dismantlement of my dimer.
I'm already use the parameters *-pbc mol* and *-pbc nojump* with trjconv.
Thanks in advance,
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