[gmx-users] Learning MD

Rodrigo Faccioli rodrigo_faccioli at uol.com.br
Mon May 10 19:21:33 CEST 2010

I suggest you start at http://manual.gromacs.org/current/online/flow.html

There are two other links:

   1. http://nmr.chem.uu.nl/~tsjerk/course/molmod/
   2. http://www.dddc.ac.cn/embo04/practicals/9_14_1.htm

Rodrigo Antonio Faccioli
Ph.D Student in Electrical Engineering
University of Sao Paulo - USP
Engineering School of Sao Carlos - EESC
Department of Electrical Engineering - SEL
Intelligent System in Structure Bioinformatics
Phone: 55 (16) 3373-9366 Ext 229
Curriculum Lattes - http://lattes.cnpq.br/1025157978990218
Public Profile - http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5

On Mon, May 10, 2010 at 1:57 PM, sonali dhindwal <
sonali11dhindwal at yahoo.co.in> wrote:

> Hello All,
> I am new at MD, and i have started doing it few months ago only. I tried to
> run some simulations but taking all the parameters using some tutorials
> given online and have not got very good results.
> Can someone please help in suggesting what is the best way to learn MD
> using Gromacs in terms of manuals and literature, what should be referred to
> do a start ?
> I am sorry in advance if this query irritates someone, but any kind of help
> will be highly appreciable.
> Regards
> --
> Sonali Dhindwal
> --
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