[gmx-users] g_sdf

[Justin A. Lemkul]

Nilesh Dhumal wrote:
> Hello Justin,
> I am doing solvation of glucose in ionic liquids. I want to show that
> glucose in surrounded by cation by ploting the iso-surface.
> Becuase of this I am using g_sdf. THe out put file is in .plt file. Can I
> get use gassview to plot the iso-surface.

I have no idea what this is.  The help information says this file is for gOpenMol.

> Do you think still I can use g_spatial to get the *.cub file.
>

Read the first line of g_spatial -h.

  -Justin

> Nilesh
>
> On Tue, May 11, 2010 1:42 pm, Justin A. Lemkul wrote:
>
>> Nilesh Dhumal wrote:
>>
>>> Hello,
>>> I am trying to calculate spatial distribution function (SDF) for my
>>> system. Can I genrate the *.cube file or gaussian format file using 
>>> sdf?
>>>  I want to use gassview or molden software to plot.
>>>
>>>
>> Have you tried g_spatial -h?  I think you will find what you're looking
>> for.
>>
>> -Justin
>>
>>
>>>
>>> Thanks
>>>
>>>
>>> Nilesh
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>> -- 
>> ========================================
>>
>>
>> Justin A. Lemkul
>> Ph.D. Candidate
>> ICTAS Doctoral Scholar
>> MILES-IGERT Trainee
>> Department of Biochemistry
>> Virginia Tech
>> Blacksburg, VA
>> jalemkul[at]vt.edu | (540) 231-9080
>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>>
>>
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>
>
>


-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================