[gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard

Emily Curtis emilymariecurtis at gmail.com
Wed May 12 16:10:25 CEST 2010

Here are all of the messages I get when I type "make".  I have been trying
to figure this out based on mailing list emails but I cant seem to find what
I need to fix.  Thank you for your help.

Emily-Curtis-MacBook-Pro:gromacs-4.0.7-mbh emily$ make
Making all in include
Making all in .
make[2]: Nothing to be done for `all-am'.
Making all in types
make[2]: Nothing to be done for `all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_ia32_sse
/bin/sh ../../../../libtool   --mode=compile cc  -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -funroll-all-loops -c -o
nb_kernel010_ia32_sse.lo nb_kernel010_ia32_sse.s
 cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-funroll-all-loops -c nb_kernel010_ia32_sse.s -o nb_kernel010_ia32_sse.o
nb_kernel010_ia32_sse.s:88:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:90:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:91:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:92:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:93:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:94:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:95:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:796:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:797:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:798:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:799:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:800:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:801:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:866:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:868:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:869:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:870:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:871:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:872:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:873:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:1345:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1346:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1347:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1348:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1349:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1350:suffix or operands invalid for `pop'
make[5]: *** [nb_kernel010_ia32_sse.lo] Error 1
make[4]: *** [all-recursive] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1

On Wed, May 12, 2010 at 3:46 AM, Erik Marklund <erikm at xray.bmc.uu.se> wrote:

> Hi,
> These error messages are not very informative, they just state that
> something went wrong in the linking process. There ought to be more
> descriptive messages prior to these linker errors. Post those, then perhaps
> we can help you out.
> Erik
> Emily Curtis skrev:
>  Dr. Bonner,
>> I am trying to install gromacs on a mac.  I am running Leopard.  I can
>> configure successfully, however, when I type "make" I am getting the same
>> errors that you reported:
>> make[5]: *** [nb_kernel010_ppc_altivec.lo] Error 1
>> make[4]: *** [all-recursive] Error 1
>> make[3]: *** [all-recursive] Error 1
>> make[2]: *** [all-recursive] Error 1
>> make[1]: *** [all] Error 2
>> make: *** [all-recursive] Error 1
>> I read the gcc manual but I can't figure out what flags I need to include.
>>  Did you ever figure out the flags you needed to include to fix this?  I
>> appreciate your help
>> Emily
> --
> -----------------------------------------------
> Erik Marklund, PhD student
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596,    75124 Uppsala, Sweden
> phone:    +46 18 471 4537        fax: +46 18 511 755
> erikm at xray.bmc.uu.se    http://folding.bmc.uu.se/
> --
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