[gmx-users] g_sas

[shahid nayeem]

Dear All
Using g_sas on trajectory file with command
    g_sas -f .xtc -s .tpr -oa atomarea.xvg
gives following output
   @    title "Area per atom"  @    xaxis  label "Atom #"  @    yaxis  label
"Area (nm\S2\N)" @TYPE xy   1 0.139885 0.0351154  2 0.0510893 0.0236223  3
0.0510077 0.0234374  4 0.0512037 0.0234554  5 0.0284763 0.0401088  6
0.236609 0.108979
Tghe first column is atom no. and what are the values in two columns. I want
average solvent accessible surface area of each atom of my protein in whole
trajectory.
Shahid Nayeem
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100528/1f3d393b/attachment.html>