[gmx-users] gromacs installation problem in ibm powerpc system

Sanku M msanku65 at yahoo.com
Mon May 31 04:59:28 CEST 2010


Hi,
  I am having a problem in a cluster which is IBM  PowerPC 970MPs and running SUSE linux and it has IBM XL  C & Fortran compliers ( xlf, xlc ).
I was trying to install gromacs 4 there using open-mpi which is already installed using ibm compilers.
Here is my configure command:

./configure --prefix=/N/u/tg-jmondal/BigRed/UTIL/gromacs_mod_4_gcc/ --enable-mpi --program-suffix=mod_4mpi CPPFLAGS=-I/N/soft/linux-sles9-ppc64/fftw3-64-single/include LDFLAGS=-L/N/soft/linux-sles9-ppc64/fftw3-64-single/lib/ --without-x CC=xlc F77=xlf CXX=xlc++

The configuration part went OK.
But when I wrote make,
it fails with following error:
"nb_kernel010_ppc_altivec.h", line 42.44: 1506-275 (S) Unexpected text p_nri encountered.
"nb_kernel010_ppc_altivec.h", line 42.76: 1506-275 (S) Unexpected text iinr encountered.
"nb_kernel010_ppc_altivec.h", line 42.102: 1506-275 (S) Unexpected text jindex encountered.
"nb_kernel010_ppc_altivec.h", line 43.70: 1506-275 (S) Unexpected text jjnr encountered.
"nb_kernel010_ppc_altivec.h", line 43.98: 1506-275 (S) Unexpected text shift encountered.
"nb_kernel010_ppc_altivec.h", line 43.124: 1506-275 (S) Unexpected text shiftvec encountered.
"nb_kernel010_ppc_altivec.h", line 44.70: 1506-275 (S) Unexpected text fshift encountered.
"nb_kernel010_ppc_altivec.h", line 44.98: 1506-275 (S) Unexpected text gid encountered.
"nb_kernel010_ppc_altivec.h", line 44.124: 1506-275 (S) Unexpected text pos encountered.
"nb_kernel010_ppc_altivec.h", line 45.70: 1506-275 (S) Unexpected text faction encountered.
"nb_kernel010_ppc_altivec.h", line 45.98: 1506-275 (S) Unexpected text charge encountered.
"nb_kernel010_ppc_altivec.h", line 45.123: 1506-275 (S) Unexpected text p_facel encountered.
"nb_kernel010_ppc_altivec.h", line 46.69: 1506-275 (S) Unexpected text p_krf encountered.
"nb_kernel010_ppc_altivec.h", line 46.100: 1506-275 (S) Unexpected text p_crf encountered.
"nb_kernel010_ppc_altivec.h", line 46.130: 1506-275 (S) Unexpected text Vc encountered.
"nb_kernel010_ppc_altivec.h", line 47.70: 1506-275 (S) Unexpected text type encountered.
"nb_kernel010_ppc_altivec.h", line 47.96: 1506-275 (S) Unexpected text p_ntype encountered.
"nb_kernel010_ppc_altivec.h", line 47.126: 1506-275 (S) Unexpected text vdwparam encountered.
"nb_kernel010_ppc_altivec.h", line 48.70: 1506-275 (S) Unexpected text Vvdw encountered.
"nb_kernel010_ppc_altivec.h", line 48.97: 1506-275 (S) Unexpected text p_tabscale encountered.
make[5]: *** [nb_kernel010_ppc_altivec.lo] Error 1
make[5]: Leaving directory `/N/hd01/tg-jmondal/BigRed/GROMACS_MODIFIED/gromacs-4.0.5_gcc/src/gmxlib/nonbonded/nb_kernel_ppc_altivec'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/N/hd01/tg-jmondal/BigRed/GROMACS_MODIFIED/gromacs-4.0.5_gcc/src/gmxlib/nonbonded'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/N/hd01/tg-jmondal/BigRed/GROMACS_MODIFIED/gromacs-4.0.5_gcc/src/gmxlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/N/hd01/tg-jmondal/BigRed/GROMACS_MODIFIED/gromacs-4.0.5_gcc/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/N/hd01/tg-jmondal/BigRed/GROMACS_MODIFIED/gromacs-4.0.5_gcc/src'
make: *** [all-recursive] Error 1

Not sure what it means. Any help to resolve the issue will be highly appreciated.

Sanku



      
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