[gmx-users] -b -e

Mark Abraham Mark.Abraham at anu.edu.au
Sun Nov 7 15:02:25 CET 2010

On 8/11/2010 12:01 AM, atila petrosian wrote:
> Dear gromacs users
> my simulation time is 10 ns (10000 ps), but, I want to use last 4ns 
> for analysis.
> for example, if I use g_rms -b 6000 -e 10000 -o rmsd.xvg, in xvg 
> output file, rmsd plotted versus time (from 6000 to 10000 ps in 
> horizontal axis). while I want horizontal axis be from 0 to 4000 ps.
> how to do it?

trjconv can be used to take subsets with -b and -e, and assign times 
with -settime. See trjconv -h.


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