[gmx-users] DSSP error

[Justin A. Lemkul]

ahmet yıldırım wrote:
> 
> 1.step-root at ab-desktop:/home/ab/Desktop# tar xvzf dsspcmbi.tar.gz
> 2.step-root at ab-desktop:/home/ab/Desktop/dssp#./DsspCompileGCC
> 3.step-root at ab-desktop:/home/ab/Desktop/dssp# cp dsspcmbi dssp
> 4.step-root at ab-desktop:/home/ab/Desktop/dssp# export 
> DSSP=/usr/local/bin/dssp
> 
> Dear Justin,
> I compiled the program. you said "Your environment variable is wrong", 
> Now is it true??
> 

Yes, although it's still not necessary.  As I said before, if your dssp binary 
is in /usr/local/bin/dssp, then that's what Gromacs expects.  You only have to 
set the DSSP environment variable if you've got the dssp binary somewhere else.

-Justin

> Thanks for your helps
> 
> 2010/11/10 Ali Naqvi <mnaqvi at ryerson.ca <mailto:mnaqvi at ryerson.ca>>
> 
>     May be the directory you are working in is read only, as Justin
>     mentioned this could be a permissions issue. 
> 
>     As an example the super computer that I use, cannot write anything
>     in the home directory, therefore all simulations and analysis are
>     done in scratch.
> 
>     Ali
> 
>     --
>     gmx-users mailing list    gmx-users at gromacs.org
>     <mailto:gmx-users at gromacs.org>
>     http://lists.gromacs.org/mailman/listinfo/gmx-users
>     Please search the archive at
>     http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>     Please don't post (un)subscribe requests to the list. Use the
>     www interface or send it to gmx-users-request at gromacs.org
>     <mailto:gmx-users-request at gromacs.org>.
>     Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
> 
> 
> 
> -- 
> Ahmet YILDIRIM
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================