[gmx-users] find the relevant structure out

#ZHAO LINA# ZHAO0139 at e.ntu.edu.sg
Sun Nov 21 13:43:29 CET 2010


I had done 10ns simulation,

by dssp, can see the beta-sheet appeared very apparently, before it's alpha-helix.

there were 5000 frames, I based on the time of the picture got from dssp, I can guess around which frames is supposed to have those beta sheets.

After I took few frames which I thought might be representive, but under pymol, show cartoon, there is none beta sheet at all. There were 5000 frames, I really do not know which one is most representive.

Or maybe some parts I understand wrong.

Thanks for any advice and if I am wrong please let me know,

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