[gmx-users] perl script for g_hbond

Carla Jamous carlajamous at gmail.com
Tue Nov 23 16:39:08 CET 2010


you should probably do:

perl HB.pl -s .pdb -map .xpm -index .xpm

More details are written inside the perl script.


On Tue, Nov 23, 2010 at 4:32 PM, leila karami <karami.leila1 at gmail.com>wrote:

> Dear Justin
> I study simulation of pr-dna complex. I want to know the percentage of
> existence of each hbond during my trajectory.
> I searched in previous lists. I want to use Perl script you offered to
> carla jamous:
> http://lists.gromacs.org/pipermail/gmx-users/2010-October/054727.html
> I'm biginner in using of Perl script, when I use your Perl script,
> Execution of ./HB.pl aborted due to compilation errors.
> how to fix it?
> any help will highly appreciated.
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