[gmx-users] perl script for g_hbond

[Justin A. Lemkul]

Quoting leila karami <karami.leila1 at gmail.com>:

> Dear Justin
>
> I study simulation of pr-dna complex. I want to know the percentage of
> existence of each hbond during my trajectory.
> I searched in previous lists. I want to use Perl script you offered to carla
> jamous:
> http://lists.gromacs.org/pipermail/gmx-users/2010-October/054727.html
>
> I'm biginner in using of Perl script, when I use your Perl script,
>
> Execution of ./HB.pl aborted due to compilation errors.
>

There should be more information in the output if the program fails.  Did you
correctly copy and paste the entire script from the body of the email?  What I
posted was syntactically correct and should have no problems.

-Justin

> how to fix it?
>
> any help will highly appreciated.
>


========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================