[gmx-users] perl script for g_hbond

Justin A. Lemkul jalemkul at vt.edu
Tue Nov 23 17:43:56 CET 2010

Quoting leila karami <karami.leila1 at gmail.com>:

> Dear Justin
> I study simulation of pr-dna complex. I want to know the percentage of
> existence of each hbond during my trajectory.
> I searched in previous lists. I want to use Perl script you offered to carla
> jamous:
> http://lists.gromacs.org/pipermail/gmx-users/2010-October/054727.html
> I'm biginner in using of Perl script, when I use your Perl script,
> Execution of ./HB.pl aborted due to compilation errors.

There should be more information in the output if the program fails.  Did you
correctly copy and paste the entire script from the body of the email?  What I
posted was syntactically correct and should have no problems.


> how to fix it?
> any help will highly appreciated.


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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