[gmx-users] cholesterol

[#ZHAO LINA#]

Hi,

Thanks for your answer, I will spend some time to figure it out. 

By the way, any links or literature or something relevant to it warmly welcome to introduce them to me.

Best regards,

lina
________________________________________
From: gmx-users-bounces at gromacs.org [gmx-users-bounces at gromacs.org] on behalf of Justin A. Lemkul [jalemkul at vt.edu]
Sent: Friday, October 01, 2010 9:06 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] cholesterol

#ZHAO LINA# wrote:
> Hi,
>
> It will be so bad for me if it really does not exist.
> I wish probably except asking Dr. google, someone else will be able to provide me some links.
> I once just wanted to see some examples how they handled its topology even I got one from
> PRODRG server, but it has problems later. Not so much in those specific simulations yet, just beginning stage.
>

If your problem is with deriving parameters, then do a thorough literature
search.  Simulations with cholesterol have been done with numerous force fields,
so parameterization methodology and/or suitable parameters should be available.

-Justin

> lina
>
> ________________________________________
> From: gmx-users-bounces at gromacs.org [gmx-users-bounces at gromacs.org] on behalf of Justin A. Lemkul [jalemkul at vt.edu]
> Sent: Friday, October 01, 2010 8:35 PM
> To: Discussion list for GROMACS users
> Subject: Re: [gmx-users] cholesterol
>
> #ZHAO LINA# wrote:
>> Hi,
>>
>> Are there some tutorials handling the cholesterol stuff. I read several
>> literature but choked in some places.
>>
>
> I said this to someone just the other day: if it's not linked at
> http://www.gromacs.org/Documentation/Tutorials or you can't find it with Google,
> it probably doesn't exist.
>
> What's more, "handling the cholesterol stuff" doesn't really lend itself to
> getting useful help.  What are you trying to do?  Derive parameters?  Build a
> membrane?  A micelle?  An LDL complex?
>
> -Justin
>
>> Thanks with best regards,
>>
>> lina
>>
>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================
--
gmx-users mailing list    gmx-users at gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists