[gmx-users] cholesterol

[Justin A. Lemkul]

#ZHAO LINA# wrote:
> Hi, 
> 
> It will be so bad for me if it really does not exist. 
> I wish probably except asking Dr. google, someone else will be able to provide me some links.
> I once just wanted to see some examples how they handled its topology even I got one from 
> PRODRG server, but it has problems later. Not so much in those specific simulations yet, just beginning stage.   
> 

If your problem is with deriving parameters, then do a thorough literature 
search.  Simulations with cholesterol have been done with numerous force fields, 
so parameterization methodology and/or suitable parameters should be available.

-Justin

> lina
> 
> ________________________________________
> From: gmx-users-bounces at gromacs.org [gmx-users-bounces at gromacs.org] on behalf of Justin A. Lemkul [jalemkul at vt.edu]
> Sent: Friday, October 01, 2010 8:35 PM
> To: Discussion list for GROMACS users
> Subject: Re: [gmx-users] cholesterol
> 
> #ZHAO LINA# wrote:
>> Hi,
>>
>> Are there some tutorials handling the cholesterol stuff. I read several
>> literature but choked in some places.
>>
> 
> I said this to someone just the other day: if it's not linked at
> http://www.gromacs.org/Documentation/Tutorials or you can't find it with Google,
> it probably doesn't exist.
> 
> What's more, "handling the cholesterol stuff" doesn't really lend itself to
> getting useful help.  What are you trying to do?  Derive parameters?  Build a
> membrane?  A micelle?  An LDL complex?
> 
> -Justin
> 
>> Thanks with best regards,
>>
>> lina
>>
> 
> --
> ========================================
> 
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
> 
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================