[gmx-users] simulation of a protein including calcium ion

[mohsen ramezanpour]

Hi
I think it is a typical ligand in your pdb file.what do you think?
if it be a ligand you can use PRODRG server to make topology file for your
ligand and you must edit other files.
please read this article: "GROMACS Tutorial for Drug – Enzyme Complex"
best
mohsen

On Sat, Oct 16, 2010 at 11:32 AM, mohsen ramezanpour <
ramezanpour.mohsen at gmail.com> wrote:

> Hi
> I think it is a typical ligand in your pdb file.what do you think?
> if it be a ligand you can use PRODRG server to make topology file for your
> ligand and you must edit other files.
> please read the attached article.
> best
> mohsen
>
> On Sat, Oct 16, 2010 at 11:04 AM, leila karami <karami.leila1 at gmail.com>wrote:
>
>> Hi gromacs users
>>
>> I want to study simulation of a protein including calcium ion. Can I use
>> gromacs force fields?
>>
>> any help will highly appreciated.
>>
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