[gmx-users] viscosity calculation

[Justin A. Lemkul]

Payman Pirzadeh wrote:
> Hello,
> 
> I used g_energy –f *.edr –vis *.xvg –s *.tpr to calculate the viscosity 
> of my system which is water. Two files are generate: *.xvg and the 
> enecorr.xvg. Now, what should I do to calculate the viscosity of my 
> system with these two files? Sorry for such naïve question.
> 

Plot the output .xvg; you will find it should contain two quantities: bulk and 
shear viscosity.

-Justin

>  
> 
> Regards,
> 
>  
> 
> Payman
> 
>  
> 
>  
> 

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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