[gmx-users] Installtion of gromacs-4.5.3

parichita parichita parichitamajumdar at yahoo.co.in
Fri Apr 1 02:01:43 CEST 2011

I am try to istalling gromacs -4.5.3 on AMD phenom II.
I am following the installtions protocols, 1 St i have installed the fftw3.2.2,
./configure --enable-threads --enables-floats --enables-sse
make install

then I am doing the "cmake". 
cd gromacs-4.5.3
mkdir exec
cd exec
cmake ../

After cmake the make -j 6 gives me an error

"Linking C shared library libmd.so
/usr/bin/ld: /usr/local/lib/libfftw3f.a(tensor.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC
/usr/local/lib/libfftw3f.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [src/mdlib/libmd.so.6] Error 1
make[1]: *** [src/mdlib/CMakeFiles/md.dir/all] Error 2
make: *** [all] Error 2"

please suggest me what I should do next...

with regards

Parichita Mazumder  
 Research Fellow 
C/O Dr. Chaitali Mukhopadhayay 
Department of Chemistry 
University of Calcutta 
92,A P C Road 
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