[gmx-users] saving coordinates

[Justin A. Lemkul]

Nilesh Dhumal wrote:
> Hello,
> 
> 
> If some part of molecule is outside the box. How Gromacs save the
> coordinates in trajectory.
> 

There is no such thing as "outside" in a periodic system.

http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions

-Justin

> 
> Nilesh
> 
> 
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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