[gmx-users] saving coordinates

[Nilesh Dhumal]

Hello Justin,

THanks for your reply.

Suppose any atom that leaves a simulation box by, say, the right-hand
face, then enters the simulation box by the left-hand face.

For these atom how gromacs save the coordinate.
Does it save the coordinate when it enter from left-hand face?

Nilesh

On Wed, April 13, 2011 9:26 pm, Justin A. Lemkul wrote:
>

>
> Nilesh Dhumal wrote:
>
>> Hello,
>>
>>
>>
>> If some part of molecule is outside the box. How Gromacs save the
>> coordinates in trajectory.
>>
>
> There is no such thing as "outside" in a periodic system.
>
>
> http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Condit
> ions
>
> -Justin
>
>
>>
>> Nilesh
>>
>>
>>
>>
>
> --
> ========================================
>
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
>
> ========================================
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org. Can't post? Read
> http://www.gromacs.org/Support/Mailing_Lists
>
>
>