[gmx-users] Re: Trajectory visualization

[bharat gupta]

Reduicng no. of frames means breaking the simulation into smaller frames ...
will it affect the result ??

On Thu, Apr 14, 2011 at 10:06 PM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:

> On 15/04/2011 2:49 PM, bharat gupta wrote:
>
>> Hi,
>>
>> I have done a simulation of 10ns but while viewing the trajectory in VMD I
>> am getting some problems. After loading the .gro and .xtc file VMD stops
>> working .. I used trjconv to compress the file but VMD doesnot read frames
>> from tat file... How can I visualize the trajectories??
>>
>
> How do you mean "does not read frames from that file"? Can you read an .xtc
> of one frame?
>
> Maybe VMD is running out of memory. Use trjconv to reduce the number of
> frames and try again.
>
> Mark
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-- 
Bharat
Ph.D. Candidate
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