[gmx-users] Fwd: genbox

leila separdar separdar.leila at gmail.com
Fri Apr 15 09:16:24 CEST 2011

I have .gro and .top of a nanoparticle at temperature 1K and I want to
add the simulation box some other atoms at temperature 300K. is there
any body knows how can I do it. I have  used (genbox -cp
nanoparticle.gro -ci otheratom.gro -p nanoparticle.top -o out) but it
add more than atoms than I expect for example if there is 600 other
atoms in otheratom,gro file this command add 2000 atoms to
simulation box and also nanoparticle.top does not update.
thanks in advance
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