[gmx-users] Fwd: genbox

Mark Abraham Mark.Abraham at anu.edu.au
Fri Apr 15 09:42:11 CEST 2011

On 15/04/2011 5:16 PM, leila separdar wrote:
> I have .gro and .top of a nanoparticle at temperature 1K and I want to
> add the simulation box some other atoms at temperature 300K. is there
> any body knows how can I do it. I have  used (genbox -cp
> nanoparticle.gro -ci otheratom.gro -p nanoparticle.top -o out) but it
> add more than atoms than I expect for example if there is 600 other
> atoms in otheratom,gro file this command add 2000 atoms to
> simulation box and also nanoparticle.top does not update.
> thanks in advance

Justin answered this earlier today.


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