[gmx-users] git release-4-5-patches behind proxy

[Roland Schulz]

Hi,

please try "git pull" (for repo.or.cz) and than redo the checkout. I
accidentally deleted the release-4-5-patches branch. But it is back and it
should work. If it does not work please run "git branch -r" and post the
result.

BTW: The error message you get for git.gromacs.org suggests that you are
behind a firewall which doesn't permit this outgoing connection. Thus in
case you want to use the main git server directly you need to use a proxy
server.

Roland

On Tue, Aug 9, 2011 at 10:03 AM, César Ávila <clavila at gmail.com> wrote:

>  I want to calculate secondary structure propensities of residues.
>
> Following Mark's message on thread
> Re: [gmx-users] secondary structure propensities of residues
>
>
> I would like to get the release-4.5-patches from git (in order to get
> do_dssp.c). Nevertheless I found problems while trying to fetch it from git
> repository due to the proxy. (I followed the advices on
> http://www.gromacs.org/Developer_Zone/Git/Git_Tutorial#Git_behind_a_proxy
>
> $ git clone git://git.gromacs.org/gromacs.git
> Initialized empty Git repository in ~/gromacs/.git/
> 2011/08/09 10:37:46 socat[17264] E CONNECT git.gromacs.org:9418: Forbidden
> fatal: The remote end hung up unexpectedly
>
> I tried the alternative suggested by Roland
>
> git clone  http://repo.or.cz/r/gromacs.git
> Initialized empty Git repository in ~/gromacs/.git/
>
> The gromacs directory is created and populated. After this I ran
>
> $git branch
> * master
>
> $git checkout --track -b release-4-5-patches origin/release-4-5-patches
> fatal: git checkout: updating paths is incompatible with switching
> branches.
> Did you intend to checkout 'origin/release-4-5-patches' which can not be
> resolved as commit?
>
> Is this a problem of the server I am using or is it just a misuse of git?
>
> Thanks
>
>
>
>
>
>
>
>
> 2011/3/22 Roland Schulz <roland at utk.edu>
>
>> you can clone from http://repo.or.cz/r/gromacs.git if you have problems
>> with a proxy.
>>
>>   On Mon, Mar 21, 2011 at 10:54 PM, Alif M Latif <prism_dead at yahoo.com>wrote:
>>
>>>            Dear Gromacs Developers,
>>>
>>> Just dropping by to say THANK YOU for v4.5.4, surely is updated version
>>> of 4.5.3 with all the bugfixes yes?. I'm having problem getting past my
>>> university's proxy server to use git. Now hopefully I can continue my
>>> research and solve git problems later..Your hard work is greatly
>>> appreciated!
>>>
>>> MUHAMMAD ALIF MOHAMMAD LATIF
>>> Laboratory of Theoretical and Computational Chemistry
>>> Department of Chemistry
>>> Faculty of Science
>>> Universiti Putra Malaysia
>>> 43400 UPM Serdang, Selangor
>>> MALAYSIA
>>>
>>>
>>>
>>>  --
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>>
>>
>>
>> --
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>>
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>


-- 
ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
865-241-1537, ORNL PO BOX 2008 MS6309
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