August 2011 Archives by subject

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Starting: Mon Aug 1 01:42:28 CEST 2011
Ending: Wed Aug 31 23:20:19 CEST 2011
Messages: 798

[gmx-users] "VdW radii" of carbons in an unified-atom system Kyeong Hyunho
[gmx-users] (no subject) Sara baretller
[gmx-users] (no subject) Janowicz, Adrianna C.
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] (no subject) Nilesh Dhumal
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] (no subject) Gavin Melaugh
[gmx-users] (no subject) Nilesh Dhumal
[gmx-users] (no subject) Joschua Sterzenbach
[gmx-users] (no subject) Justin A. Lemkul
[gmx-users] -dt option in g_velacc Jinan Niu
[gmx-users] -dt option in g_velacc Mark Abraham
[gmx-users] Re: -dt option in g_velacc Jinan Niu
[gmx-users] Re: -dt option in g_velacc Mark Abraham
[gmx-users] -ter option with pdb2gmx Vijayaraj
[gmx-users] -ter option with pdb2gmx Justin A. Lemkul
[gmx-users] -ter option with pdb2gmx Vijayaraj
[gmx-users] -ter option with pdb2gmx Mark Abraham
[gmx-users] .mdp file manoj damale
[gmx-users] .mdp file Mark Abraham
[gmx-users] .mdp file datta sarma
[Fwd: Re: [gmx-users] VSMP cluster performance changes with time] Anupam Nath Jha
[Fwd: Re: [gmx-users] VSMP cluster performance changes with time] Mark Abraham
[gmx-users] Re: Mark Abraham
[gmx-users] Re: Janowicz, Adrianna C.
[gmx-users] Re: a question about order parameter of POPC Justin A. Lemkul
[gmx-users] Re: A very good morning Sir Justin A. Lemkul
[gmx-users] add Argon to a force field? Amir Abbasi
[gmx-users] add Argon to a force field? Justin A. Lemkul
[gmx-users] Add ions in the MARTINI force field Edroaldo Lummertz da Rocha
[gmx-users] Adding_topology_aminoacid shahid nayeem
[gmx-users] Adding_topology_aminoacid Kukol, Andreas
[gmx-users] aldehida hamed amini
[gmx-users] aldehida Justin A. Lemkul
[gmx-users] aldehida Justin A. Lemkul
[gmx-users] amber DNA non-integer charge Justin A. Lemkul
[gmx-users] amber DNA non-integer charge Kamesh Narasimhan
[gmx-users] amber DNA non-integer charge Justin A. Lemkul
[gmx-users] amber DNA non-integer charge Kamesh Narasimhan
[gmx-users] amber DNA non-integer charge Kamesh Narasimhan
[gmx-users] angular velocities in gromacs? Tom
[gmx-users] angular velocities in gromacs? Mark Abraham
[gmx-users] angular velocities in gromacs? Matthew Zwier
Antw: Re: [gmx-users] calculate residence time for a protein complex aiswarya.pawar at gmail.com
Antw: Re: [gmx-users] calculate residence time for a protein complex aiswarya.pawar at gmail.com
Antw: Re: [gmx-users] calculate residence time for a protein complex Emanuel Peter
Antw: Re: [gmx-users] Hydrogen existence time Emanuel Peter
Antw: Re: [gmx-users] Hydrogen existence time aiswarya.pawar at gmail.com
Antw: Re: [gmx-users] Hydrogen existence time Emanuel Peter
Antw: Re: [gmx-users] Hydrogen existence time aiswarya.pawar at gmail.com
Antw: Re: [gmx-users] Hydrogen existence time aiswarya.pawar at gmail.com
Antw: Re: [gmx-users] Hydrogen existence time aiswarya pawar
Antw: Re: Antw: Re: [gmx-users] Hydrogen existence time Emanuel Peter
Antw: Re: Antw: Re: [gmx-users] Hydrogen existence time Emanuel Peter
Antw: Re: Re: Antw: Re: [gmx-users] Hydrogen existence time Emanuel Peter
[gmx-users] append files in Gromacs 3.3 Rebeca García Fandiño
[gmx-users] append files in Gromacs 3.3 Justin A. Lemkul
[gmx-users] append files in Gromacs 3.3 Rebeca García Fandiño
[gmx-users] Arginine_Hydrochloride topology shahid nayeem
[gmx-users] Arginine_Hydrochloride topology Mark Abraham
[gmx-users] Arginine_Hydrochloride topology shahid nayeem
[gmx-users] Arginine_Hydrochloride topology Justin A. Lemkul
[gmx-users] Arginine_Hydrochloride topology shahid nayeem
[gmx-users] Arginine_Hydrochloride topology Justin A. Lemkul
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Justin A. Lemkul
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Justin A. Lemkul
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Justin A. Lemkul
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Mark Abraham
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Mark Abraham
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Justin A. Lemkul
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Mark Abraham
[gmx-users] atom types Gavin Melaugh
[gmx-users] atom types Justin A. Lemkul
[gmx-users] atom types Mark Abraham
[gmx-users] Atomtype CR1 not found rainy908
[gmx-users] Atomtype CR1 not found Justin A. Lemkul
[gmx-users] berendsen P coupling and fluctuation properties Elisabeth
[gmx-users] berendsen P coupling and fluctuation properties Mark Abraham
[gmx-users] berendsen P coupling and fluctuation properties Elisabeth
[gmx-users] berendsen P coupling and fluctuation properties Justin A. Lemkul
[gmx-users] Re: berendsen P coupling and fluctuation properties Dr. Vitaly V. Chaban
[gmx-users] berendsen P coupling and fluctuation properties Elisabeth
[gmx-users] berendsen P coupling and fluctuation properties Justin A. Lemkul
[gmx-users] bond constraints Gavin Melaugh
[gmx-users] bond constraints Justin A. Lemkul
[gmx-users] Box-size Kavyashree M
[gmx-users] Box-size Mark Abraham
[gmx-users] Box-size: please reply Kavyashree M
[gmx-users] Box-size: please reply Tsjerk Wassenaar
[gmx-users] Box-size: please reply Kavyashree M
[gmx-users] Box-size: please reply Kavyashree M
[gmx-users] Box-size: please reply Mark Abraham
[gmx-users] Buckingham interactions xiaojing gong
[gmx-users] Buckingham interactions Mark Abraham
[gmx-users] bug in demux.pl Swarnendu Tripathi
Re: [gmx-users] bug in demux.pl wibke.sudholt at cloudbroker.com
[gmx-users] bug in demux.pl Mark Abraham
[gmx-users] bug in demux.pl Swarnendu Tripathi
[gmx-users] bug in editconf for making a box ? combined two residues into one Justin A. Lemkul
[gmx-users] bug in editconf for making a box ? combined two residues into one Justin A. Lemkul
[gmx-users] bug in editconf for making a box ? combined two residues into one Justin A. Lemkul
[gmx-users] bug in editconf for making a box ? combined two residues into one maria goranovic
[gmx-users] bug in editconf for making a box ? combined two residues into one lina
[gmx-users] bug in editconf for making a box ? combined two residues into one maria goranovic
[gmx-users] bug in editconf for making a box ? combined two residues into one Tsjerk Wassenaar
[gmx-users] calculate residence time for a protein complex aiswarya pawar
[gmx-users] calculate residence time for a protein complex aiswarya pawar
[gmx-users] calculate residence time for a protein complex Mark Abraham
[gmx-users] cannot inactivate fitting in g_rmsf - incomplete coordinates are written Thomas Evangelidis
[gmx-users] cannot open file Justin A. Lemkul
[gmx-users] Re: Carbon Nanotubes with Cisplatin Inside it Justin A. Lemkul
[gmx-users] center of box protein nahren manuel
[gmx-users] center of box protein Justin A. Lemkul
[gmx-users] charge assignment for the anomeric carbon in 53a6 ff Yun Shi
[gmx-users] charge assignment for the anomeric carbon in 53a6 ff Yun Shi
[gmx-users] charge assignment for the anomeric carbon in 53a6 ff Justin A. Lemkul
[gmx-users] charge assignment for the anomeric carbon in 53a6 ff Justin A. Lemkul
[gmx-users] charge assignment for the anomeric carbon in 53a6 ff Yun Shi
[gmx-users] charge assignment for the anomeric carbon in 53a6 ff Justin A. Lemkul
[gmx-users] Charge groups in Charmm for lipids Michael McGovern
[gmx-users] Charge groups in Charmm for lipids Thomas Piggot
[gmx-users] Charge groups in Charmm for lipids Michael McGovern
[gmx-users] Charge groups in Charmm for lipids Peter C. Lai
[gmx-users] Charge groups in Charmm for lipids Thomas Piggot
[gmx-users] Charge groups in Charmm for lipids Thomas Piggot
[gmx-users] CMAP Dihedrals and free energy perturbations Wright, Louise
[gmx-users] CMAP Dihedrals and free energy perturbations Mark Abraham
[gmx-users] Re: coarse grain hydrogen bonding Justin A. Lemkul
[gmx-users] compile template.c Park, Jae Hyun nmn
[gmx-users] compile template.c Park, Jae Hyun nmn
[gmx-users] compile template.c Mark Abraham
[gmx-users] Compute Intensive benchmarks for Gromacs rajat phull
[gmx-users] Constraints not working in pull code (sometimes, sometimes not) Krapnik
[gmx-users] Constraints not working in pull code (sometimes, sometimes not) Justin A. Lemkul
[gmx-users] Constraints not working in pull code (sometimes, sometimes not) chris.neale at utoronto.ca
[gmx-users] Re: Constraints not working in pull code (sometimes, sometimes not) Krapnik
[gmx-users] Constraints not working in pull code (sometimes, sometimes not) chris.neale at utoronto.ca
[gmx-users] Re: Constraints not working in pull code (sometimes, sometimes not) Krapnik
[gmx-users] constraints on angle Nilesh Dhumal
[gmx-users] constraints on angle Tsjerk Wassenaar
[gmx-users] constraints on angle Mark Abraham
Re: Re: [gmx-users] constraints on angle wibke.sudholt at cloudbroker.com
[gmx-users] constraints on angle Junior Nebeker
[gmx-users] constraints on angle Mark Abraham
[gmx-users] constraints on angle Junior Nebeker
[gmx-users] Contribution of delta bonding energy in the delta free energy Mark Abraham
[gmx-users] Contribution of delta bonding energy in the delta free energy afsaneh maleki
[gmx-users] Contribution of delta bonding energy in the delta free energy Justin A. Lemkul
[gmx-users] Contribution of delta bonding energy in the delta free energy afsaneh maleki
[gmx-users] Conversion of gromacs trajectory file aiswarya.pawar at gmail.com
[gmx-users] Conversion of gromacs trajectory file Justin A. Lemkul
[gmx-users] Conversion of gromacs trajectory file aiswarya.pawar at gmail.com
[gmx-users] Conversion of the GLYCAM dihedral parameters sa
[gmx-users] Convert drug Charmm topology to Gromacs Steven Neumann
[gmx-users] Convert drug Charmm topology to Gromacs Justin A. Lemkul
[gmx-users] Convert drug Charmm topology to Gromacs Mark Abraham
[gmx-users] Convert drug Charmm topology to Gromacs Jianguo Li
[gmx-users] Convert drug Charmm topology to Gromacs Steven Neumann
[gmx-users] Convert drug Charmm topology to Gromacs Justin A. Lemkul
[gmx-users] Convert drug Charmm topology to Gromacs Fabian Casteblanco
[gmx-users] Convert drug Charmm topology to Gromacs Alexandre Suman de Araujo
[gmx-users] Re: Convert drug Charmm topology to Gromacs Fabian Casteblanco
[gmx-users] Re: Convert drug Charmm topology to Gromacs Alexandre Suman de Araujo
[gmx-users] Re: Convert drug Charmm topology to Gromacs Justin A. Lemkul
[gmx-users] converting cpt between single and double precision Peter C. Lai
[gmx-users] converting cpt between single and double precision Mark Abraham
[gmx-users] converting cpt between single and double precision Peter C. Lai
[gmx-users] converting cpt between single and double precision Mark Abraham
[gmx-users] coordinated of center of mass shikha nangia
[gmx-users] coordinated of center of mass Tsjerk Wassenaar
[gmx-users] correction for minimum image distance violation Kavyashree M
[gmx-users] correction for minimum image distance violation Justin A. Lemkul
[gmx-users] correction for minimum image distance violation Kavyashree M
[gmx-users] correction for minimum image distance violation Mark Abraham
[gmx-users] couldn't find topology match for atom type opls_102 Amir Abbasi
[gmx-users] couldn't find topology match for atom type opls_102 Justin A. Lemkul
[gmx-users] couldn't find topology match for atom type opls_102 Justin A. Lemkul
[gmx-users] couldn't find topology match for atom type opls_102 Amir Abbasi
[gmx-users] cutoffs Anja Kuhnhold
[gmx-users] cutoffs Mark Abraham
[gmx-users] Dear Lemkul Ravi Kumar Venkatraman
[gmx-users] Dear Lemkul Tsjerk Wassenaar
[gmx-users] deprotonated Cys in Zn ion binding site Tomek Wlodarski
[gmx-users] Difficulty building a topology for a synthetic branched PEG-peptide molecule Mark Abraham
[gmx-users] Difficulty building a topology for a synthetic branched PEG-peptide molecule Pablo Englebienne
[gmx-users] Re: Difficulty building a topology for a synthetic, branched PEG-peptide molecule [SOLVED] Pablo Englebienne
[gmx-users] dihedral problem when converging Charmm FF into Gromacs format Baofu Qiao
[gmx-users] Dihedral Question Fabian Casteblanco
[gmx-users] Dihedral Question Justin A. Lemkul
[gmx-users] Re: Dihedral Question Fabian Casteblanco
[gmx-users] dispersion corrections in an anisotropic system Zuzana Benkova
Re: [gmx-users] dispersion corrections in an anisotropic system wibke.sudholt at cloudbroker.com
[gmx-users] dispersion corrections in an anisotropic system Justin A. Lemkul
[gmx-users] distance between mass center of two groups Sajad Ahrari
[gmx-users] distance between mass center of two groups Amit Choubey
[gmx-users] distance between mass center of two groups Mark Abraham
[gmx-users] do we still have a do_dssp and dssp compatibility issue? thread: do_dssp failed to execute César Ávila
[gmx-users] do we still have a do_dssp and dssp compatibility issue? thread: do_dssp failed to execute Pradip Biswas
[gmx-users] do_dssp afsaneh maleki
[gmx-users] do_dssp Justin A. Lemkul
[gmx-users] doubt in deuterium order parameter Parthasarathi, Ramya
[gmx-users] Error found on grompp - energy minimization ITHAYARAJA
[gmx-users] Error found on grompp - energy minimization Mark Abraham
[gmx-users] Error from residues added to rtp file Delmotte, Antoine
[gmx-users] Error from residues added to rtp file Thomas Piggot
[gmx-users] Error from residues added to rtp file Delmotte, Antoine
[gmx-users] Error from residues added to rtp file Mark Abraham
[gmx-users] error:You might need to add atom H to the hydrogen database of residue Jianguo Li
[gmx-users] error:You might need to add atom H to the hydrogen database of residue Kamesh Narasimhan
[gmx-users] error:You might need to add atom H to the hydrogen database of residue Jianguo Li
[gmx-users] error:You might need to add atom H to the hydrogen database of residue Kamesh Narasimhan
[gmx-users] error:You might need to add atom H to the hydrogen database of residue Oliver Grant
[gmx-users] error:You might need to add atom H to the hydrogen database of residue Kamesh Narasimhan
[gmx-users] error:You might need to add atom H to the hydrogen database of residue Kamesh Narasimhan
[gmx-users] Re: Essential Dynamic analysis Justin A. Lemkul
[gmx-users] Re: Essential Dynamic analysis Tsjerk Wassenaar
[gmx-users] extract subset from cpt? Peter C. Lai
[gmx-users] extract subset from cpt? Justin A. Lemkul
[gmx-users] extract subset from cpt? Roland Schulz
[gmx-users] extract subset from cpt? Justin A. Lemkul
[gmx-users] extract subset from cpt? Roland Schulz
[gmx-users] Fatal error when position restraint the coordinates-reg Mark Abraham
[gmx-users] Fatal error when position restraint the coordinates-reg ITHAYARAJA
[gmx-users] FEP charged molecule cuestion Marcelino Arciniega Castro
[gmx-users] FEP charged molecule cuestion David Mobley
[gmx-users] Force evaluation in umbrella pulling with nonzero pull_rate Lin, Dejun
[gmx-users] Force field for thiocyanate ions Sanku M
[gmx-users] Force field for thiocyanate ions Mark Abraham
[gmx-users] Force-field checking options mcgrath
[gmx-users] Force-field checking options Justin A. Lemkul
[gmx-users] Force-field checking options mcgrath
[gmx-users] Force-field checking options Mark Abraham
[gmx-users] Force-field checking options Mark Abraham
[gmx-users] Force-field checking options mcgrath
[gmx-users] Force-field checking options Justin A. Lemkul
[gmx-users] Force-field checking options Mark Abraham
[gmx-users] Force-field checking options mcgrath
Re: Re: [gmx-users] Force-field checking options wibke.sudholt at cloudbroker.com
[gmx-users] Free energy pawan raghav
[gmx-users] Free energy calculation Fabian Casteblanco
[gmx-users] Free energy calculation Justin A. Lemkul
[gmx-users] Re: Free energy calculation Fabian Casteblanco
[gmx-users] Free energy calculation question Fabian Casteblanco
[gmx-users] Free energy calculation question Justin A. Lemkul
[gmx-users] Re: Free energy calculation question Fabian Casteblanco
[gmx-users] Re: Free energy calculation question Justin A. Lemkul
[gmx-users] Re: Free energy calculation question Fabian Casteblanco
[gmx-users] Re: Free energy calculation question Justin A. Lemkul
[gmx-users] Re: Free energy calculation question Fabian Casteblanco
[gmx-users] Free Energy Integrator Selection Fabian Casteblanco
[gmx-users] Free Energy Integrator Selection Justin A. Lemkul
[gmx-users] Free Energy Integrator Selection Marcelino Arciniega Castro
[gmx-users] Free Energy Integrator Selection chris.neale at utoronto.ca
[gmx-users] Free_energy size selection Fabian Casteblanco
[gmx-users] Fwd: Regarding segmentation fault Mark Abraham
[gmx-users] g_covar גדעון לפידות
[gmx-users] g_covar Tsjerk Wassenaar
[gmx-users] g_covar Yuri Garmay
[gmx-users] g_covar Tsjerk Wassenaar
[gmx-users] g_covar Yuri Garmay
[gmx-users] g_covar Tsjerk Wassenaar
[gmx-users] Re: g_covar גדעון לפידות
[gmx-users] g_covar Yuri Garmay
[gmx-users] Re: g_covar Yuri Garmay
[gmx-users] Re: g_covar Tsjerk Wassenaar
[gmx-users] g_dipoles - averaging Kukol, Andreas
[gmx-users] g_dipoles - averaging Dommert Florian
[gmx-users] g_dipoles - averaging Kukol, Andreas
[gmx-users] g_dipoles - averaging Dommert Florian
[gmx-users] g_disre problems Francisco Gomes Neto
[gmx-users] g_disre problems Justin A. Lemkul
[gmx-users] g_energy - what is COMPull En Ilona Baldus
[gmx-users] g_hbond Steven Neumann
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] g_hbond Steven Neumann
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] g_hbond Steven Neumann
[gmx-users] g_hbond Steven Neumann
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] g_hbond Steven Neumann
[gmx-users] g_hbond Steven Neumann
[gmx-users] g_hbond Justin A. Lemkul
[gmx-users] g_hbond simple question Yao Yao
[gmx-users] g_hbond simple question Justin A. Lemkul
[gmx-users] g_lie pawan raghav
[gmx-users] g_membed stops after only one iteration maria goranovic
[gmx-users] g_rdf Justin A. Lemkul
[gmx-users] g_rdf Nilesh Dhumal
[gmx-users] g_wham issue shikha nangia
[gmx-users] g_wham issue chris.neale at utoronto.ca
[gmx-users] gd_29 or gd_41 ? Yun Shi
[gmx-users] Re: gd_29 or gd_41 ? Yun Shi
[gmx-users] gd_29 or gd_41 ? Justin A. Lemkul
[gmx-users] Re: gd_29 or gd_41 ? Justin A. Lemkul
[gmx-users] git release-4-5-patches behind proxy César Ávila
[gmx-users] git release-4-5-patches behind proxy Roland Schulz
[gmx-users] gmx-users Digest, Vol 88, Issue 131 meisam valizadeh kiamahalleh
[gmx-users] gmx-users Digest, Vol 88, Issue 131 Mark Abraham
[gmx-users] RE: gmx-users Digest, Vol 88, Issue 46 intra\sa175950
[gmx-users] RE: gmx-users Digest, Vol 88, Issue 65 intra\sa175950
[gmx-users] Gromacs 4.0.7 on Blue Gene/P Rongliang Wu
[gmx-users] GROMACS 4.5.4 keep crashing all the time chris.neale at utoronto.ca
[gmx-users] GROMACS 4.5.4 keep crashing all the time Itamar Kass
[gmx-users] GROMACS 4.5.4 keep crashing all the time chris.neale at utoronto.ca
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Itamar Kass
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Matthew Zwier
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Itamar Kass (Med)
Re: Re: [gmx-users] GROMACS 4.5.4 keep crashing all the time. wibke.sudholt at cloudbroker.com
[gmx-users] GROMACS 4.5.4 keep crashing all the time. chris.neale at utoronto.ca
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Justin A. Lemkul
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Itamar Kass
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Mark Abraham
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Justin A. Lemkul
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Itamar Kass
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Itamar Kass
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Matthew Zwier
[gmx-users] GROMACS 4.5.4 keep crashing all the time. Matthew Zwier
[gmx-users] Gromacs compilation Anthony Cruz Balberdi
[gmx-users] Gromacs compilation Mark Abraham
[gmx-users] Gromacs on GPU: GTX or Tesla? Efrat Exlrod
[gmx-users] RE: Gromacs on GPU: GTX or Tesla? Jagdish S. Varma
[gmx-users] RE: Gromacs on GPU: GTX or Tesla? Szilárd Páll
[gmx-users] RE: Gromacs on GPU: GTX or Tesla? Efrat Exlrod
[gmx-users] Re: gromacs question topologie Justin A. Lemkul
[gmx-users] Gromacs tool Dina Kreter
[gmx-users] Gromacs tool Justin A. Lemkul
[gmx-users] GROMACS with GPU Park, Jae Hyun nmn
[gmx-users] GROMACS with GPU Szilárd Páll
[gmx-users] GROMACS with GPU Jones de Andrade
[gmx-users] gromacs: sound wave in liquid? Juliette N.
[gmx-users] gromacs: sound wave in liquid? Dommert Florian
[gmx-users] gromacs: sound wave in liquid? Jussi Lehtola
[gmx-users] h-bonds constraints Dr. Vitaly V. Chaban
[gmx-users] h-bonds constraints Bogdan Costescu
[gmx-users] h-bonds constraints Dr. Vitaly V. Chaban
[gmx-users] Hamiltonian REMD code uploaded in gromacs / user contributions / other software Mu Yuguang (Dr)
[gmx-users] Hamiltonian replica exchange ? Sanku M
[gmx-users] Hamiltonian replica exchange? Sanku M
[gmx-users] Hamiltonian replica exchange? Michael Shirts
[gmx-users] Heat of Vaporization Elisabeth
[gmx-users] Re: Heat of Vaporization Dr. Vitaly V. Chaban
[gmx-users] Re: Heat of Vaporization Dr. Vitaly V. Chaban
[gmx-users] Re: Heat of Vaporization Elisabeth
[gmx-users] Re: Heat of Vaporization Dr. Vitaly V. Chaban
[gmx-users] HIS N Terminal - Charmm27 force field Rodrigo Faccioli
[gmx-users] HIS N Terminal - Charmm27 force field Justin A. Lemkul
[gmx-users] how to calculate the conc in the genion lina
[gmx-users] how to calculate the conc in the genion Mark Abraham
[gmx-users] how to calculate the conc in the genion lina
[gmx-users] how to calculate the conc in the genion Tsjerk Wassenaar
[gmx-users] how to calculate the conc in the genion lina
[gmx-users] how to calculate the conc in the genion lina
[gmx-users] how to calculate the conc in the genion Justin A. Lemkul
[gmx-users] how to calculate the conc in the genion Tsjerk Wassenaar
[gmx-users] how to calculate the conc in the genion Mark Abraham
[gmx-users] how to calculate the conc in the genion lina
[gmx-users] How to exclude the interactions between molecule A and B in Gromacs? Mark Abraham
[gmx-users] How to exclude the interactions between molecule A and B in Gromacs? DeChang Li
[gmx-users] How to install FFTW 3.2.2 afsaneh maleki
[gmx-users] How to install FFTW 3.2.2 Justin A. Lemkul
[gmx-users] How to install gromacs 4.5.1 afsaneh maleki
[gmx-users] How to install gromacs 4.5.1 Mark Abraham
[gmx-users] How to install gromacs 4.5.1 lina
[gmx-users] How to run solvation dynamics for some organic molecules Justin A. Lemkul
[gmx-users] How to run solvation dynamics for some organic molecules Justin A. Lemkul
[gmx-users] How to run solvation dynamics for some organic molecules lina
[gmx-users] How to run solvation dynamics for some organic molecules Matthias Schmidt
[gmx-users] How to run solvation dynamics for some organic molecules Ravi Kumar Venkatraman
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Justin A. Lemkul
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Justin A. Lemkul
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Justin A. Lemkul
[gmx-users] how to simulate a line charge Bogdan Costescu
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Justin A. Lemkul
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Justin A. Lemkul
[gmx-users] how to simulate a line charge Amit Choubey
[gmx-users] how to simulate a line charge Justin A. Lemkul
[gmx-users] How to suppress the screen info & how to overwrite files? Hiroshi Fujisaki
[gmx-users] How to suppress the screen info & how to overwrite files? Justin A. Lemkul
[gmx-users] How to suppress the screen info & how to overwrite files? Hiroshi Fujisaki
[gmx-users] How to suppress the screen info & how to overwrite files? Da-Wei Li
[gmx-users] How to suppress the screen info & how to overwrite files? Bogdan Costescu
[gmx-users] Hydrogen atoms type Amir Abbasi
[gmx-users] Hydrogen atoms type Justin A. Lemkul
[gmx-users] Hydrogen existence time aiswarya.pawar at gmail.com
[gmx-users] Hydrogen existence time Justin A. Lemkul
[gmx-users] Hydrogen existence time aiswarya.pawar at gmail.com
[gmx-users] Hydrogen existence time Justin A. Lemkul
[gmx-users] Hydrogen existence time aiswarya.pawar at gmail.com
[gmx-users] Hydrogen existence time Justin A. Lemkul
[gmx-users] Hydrogen existence time aiswarya.pawar at gmail.com
[gmx-users] Hydrogen existence time Mark Abraham
[gmx-users] Hydrogen existence time aiswarya pawar
[gmx-users] If the system net charge is zero, do I need to add ions? Justin A. Lemkul
[gmx-users] If the system net charge is zero, do I need to add ions? "Dr. Ramón Garduño-Juárez"
[gmx-users] Re: Improving Energy Conservation in NVE Simulation of Water Justin A. Lemkul
[gmx-users] Re: Improving Energy Conservation in NVE Simulation of Water Andrew DeYoung
[gmx-users] increasing cut-off and PME grid spacing Hsin-Lin Chiang
[gmx-users] increasing cut-off and PME grid spacing Justin A. Lemkul
[gmx-users] increasing cut-off and PME grid spacing Hsin-Lin Chiang
[gmx-users] increasing cut-off and PME grid spacing Hsin-Lin Chiang
[gmx-users] increasing cut-off and PME grid spacing Justin A. Lemkul
[gmx-users] increasing cut-off and PME grid spacing Hsin-Lin Chiang
[gmx-users] increasing cut-off and PME grid spacing Justin A. Lemkul
[gmx-users] increasing cut-off and PME grid spacing Hsin-Lin Chiang
[gmx-users] index file subgroups Elisabeth
[gmx-users] index file subgroups Justin A. Lemkul
[gmx-users] Invitation to connect on LinkedIn Marco Miele via LinkedIn
[gmx-users] Invitation to connect on LinkedIn MING LI via LinkedIn
[gmx-users] Invitation to connect on LinkedIn MING LI via LinkedIn
[gmx-users] Jarzynski and PMF Sai Kumar Ramadugu
[gmx-users] Jumping protein Steven Neumann
[gmx-users] Jumping protein Justin A. Lemkul
[gmx-users] Kinetic energy of a single molecule Size Zheng
[gmx-users] Kinetic energy of a single molecule Justin A. Lemkul
[gmx-users] large error bars in PMF Rebeca García Fandiño
[gmx-users] large error bars in PMF Justin A. Lemkul
[gmx-users] LINCS with amber99SB ? Yun Shi
[gmx-users] LINCS with amber99SB ? Justin A. Lemkul
[gmx-users] Re: LINCS with amber99SB ? Yun Shi
[gmx-users] Re: LINCS with amber99SB ? Justin A. Lemkul
[gmx-users] Liquid/Liquid Maria Hamilton
[gmx-users] Liquid/Liquid Justin A. Lemkul
[gmx-users] Re: LJ Dr. Vitaly V. Chaban
[gmx-users] Re: LJ Dr. Vitaly V. Chaban
[gmx-users] Re: LJ Juliette N.
[gmx-users] Re: LJ Justin A. Lemkul
[gmx-users] Re: LJ Juliette N.
[gmx-users] Re: LJ Dr. Vitaly V. Chaban
[gmx-users] Re: LJ Justin A. Lemkul
[gmx-users] Re: LJ Dr. Vitaly V. Chaban
[gmx-users] LJ-14 / LJ(SR) Juliette N.
[gmx-users] LJ-14 / LJ(SR) Justin A. Lemkul
[gmx-users] LJ-14 / LJ(SR) Juliette N.
[gmx-users] malloc on mac Sara baretller
[gmx-users] malloc on mac Justin A. Lemkul
[gmx-users] malloc on mac Sara baretller
[gmx-users] malloc on mac Justin A. Lemkul
[gmx-users] malloc on mac Tsjerk Wassenaar
[gmx-users] malloc on mac Sara baretller
[gmx-users] MARTINI / all-atom mapping Michael Daily
[gmx-users] MARTINI / all-atom mapping XAvier Periole
[gmx-users] MARTINI / all-atom mapping Michael Daily
[gmx-users] MARTINI / all-atom mapping Justin A. Lemkul
[gmx-users] MARTINI / all-atom mapping Thomas Piggot
[gmx-users] MARTINI / all-atom mapping XAvier Periole
[gmx-users] mdp params and forcefields Алексей Раевский
[gmx-users] mdp params and forcefields Justin A. Lemkul
[gmx-users] mdrun crashes with 'One or more interactions were multiple assigned in the domain decompostion' Mark Abraham
[gmx-users] mdrun crashes with 'One or more interactions were multiple assigned in the domain decompostion' lina
[gmx-users] mdrun crashes with 'One or more interactions were multiple assigned in the domain decompostion' Sebastian Breuers
[gmx-users] mdrun crashes with 'One or more interactions were multiple assigned in the domain decompostion' Da-Wei Li
[gmx-users] mdrun crashes with 'One or more interactions were multiple assigned in the domain decompostion' Sebastian Breuers
[gmx-users] mdrun did not support large file offsets Bert
[gmx-users] mdrun did not support large file offsets Justin A. Lemkul
[gmx-users] RE: mdrun did not support large file offsets Bert
[gmx-users] mdrun-gpu, fatal error: reading tpx file (topol.tpr) version 73 with version 71 program Justin A. Lemkul
[gmx-users] mdrun-gpu, fatal error: reading tpx file (topol.tpr) version 73 with version 71 program H.Ghorbanfekr
[gmx-users] mdrun-gpu, fatal error: reading tpx file (topol.tpr) version 73 with version 71 program H.Ghorbanfekr
[gmx-users] more than 100% CPU Park, Jae Hyun nmn
[gmx-users] more than 100% CPU Warren Gallin
[gmx-users] more than 100% CPU Park, Jae Hyun nmn
[gmx-users] more than 100% CPU felmerino at uchile.cl
[gmx-users] more than 100% CPU Warren Gallin
[gmx-users] more than 100% CPU chris.neale at utoronto.ca
[gmx-users] more than 100% CPU Szilárd Páll
[gmx-users] more than 100% CPU Park, Jae Hyun nmn
[gmx-users] negative dihedral cp (during cgenff conversion) Peter C. Lai
[gmx-users] negative dihedral cp (during cgenff conversion) Mark Abraham
[gmx-users] Re: non-neutralized system Justin A. Lemkul
[gmx-users] Not receiving replies Kavyashree M
[gmx-users] Not receiving replies Justin A. Lemkul
[gmx-users] Not receiving replies Kavyashree M
[gmx-users] Not receiving replies Mark Abraham
[gmx-users] NPT - density off Elisabeth
Re: [gmx-users] NPT - density off wibke.sudholt at cloudbroker.com
[gmx-users] NPT - density off Mark Abraham
[gmx-users] NPT - density off Elisabeth
[gmx-users] NPT - density off Mark Abraham
[gmx-users] Obtain in a readable format the pairtypes values generated by grompp intra\sa175950
[gmx-users] Obtain in a readable format the pairtypes values generated by grompp Mark Abraham
[gmx-users] Obtaining protein structure Steven Neumann
[gmx-users] Obtaining protein structure Justin A. Lemkul
[gmx-users] Obtaining protein structure Mark Abraham
[gmx-users] Obtaining protein structure Steven Neumann
[gmx-users] Obtaining protein structure Justin A. Lemkul
[gmx-users] OPLS-AA Unknown Atomtype Yao Yao
[gmx-users] OPLS-AA Unknown Atomtype Justin A. Lemkul
[gmx-users] OPLS-AA Unknown Atomtype Justin A. Lemkul
[gmx-users] OPLS-AA Unknown Atomtype Yao Yao
[gmx-users] OPLS-AA Unknown Atomtype Justin A. Lemkul
[gmx-users] OPLS-AA Unknown Atomtype Yao Yao
[gmx-users] OPLS-AA Unknown Atomtype Justin A. Lemkul
[gmx-users] OPLSAA parameters Elisabeth
Re: Re: [gmx-users] OPLSAA parameters wibke.sudholt at cloudbroker.com
[gmx-users] OPLSAA parameters Justin A. Lemkul
[gmx-users] OPLSAA parameters Elisabeth
[gmx-users] order parameter Parthasarathi, Ramya
[gmx-users] pair types in FEP calculations Marcelino Arciniega Castro
[gmx-users] pair types in FEP calculations Justin A. Lemkul
[gmx-users] pair types in FEP calculations Mark Abraham
[gmx-users] parallel job crash for large system Dr. Vitaly V. Chaban
[gmx-users] Re: parallel job crash for large system Dr. Vitaly V. Chaban
[gmx-users] Re: parallel job crash for large system Mark Abraham
[gmx-users] Re: parallel job crash for large system chris.neale at utoronto.ca
[gmx-users] Re: parallel job crash for large system Dr. Vitaly V. Chaban
[gmx-users] Re: parallel job crash for large system Dr. Vitaly V. Chaban
[gmx-users] Re: parallel job crash for large system Dr. Vitaly V. Chaban
[gmx-users] Re: parallel job crash for large system Mark Abraham
[gmx-users] Re: parallel job crash for large system Dr. Vitaly V. Chaban
[gmx-users] parameters for CH1 -- S -- CH2 ? Yun Shi
[gmx-users] parameters for CH1 -- S -- CH2 ? Mark Abraham
[gmx-users] part number in extending simulation Hsin-Lin Chiang
[gmx-users] part number in extending simulation Dommert Florian
[gmx-users] part number in extending simulation Hsin-Lin Chiang
[gmx-users] part number in extending simulation Dommert Florian
[gmx-users] part number in extending simulation Hsin-Lin Chiang
[gmx-users] PCA and Free energy landscape bipin singh
[gmx-users] pdb2gmx of nucleic acids with ffamber03 force field MARIA ICIAR FRADES ALZUETA
[gmx-users] pdb2gmx of nucleic acids with ffamber03 force field Justin A. Lemkul
[gmx-users] Re: pdb2gmx fatal error - atom not found Justin A. Lemkul
[gmx-users] Phd positions available Giovanni Bussi
[gmx-users] Please rectify free energy problem pawan raghav
[gmx-users] Please rectify free energy problem Mark Abraham
[gmx-users] pmf_calculation Justin A. Lemkul
[gmx-users] pmf_calculation shahid nayeem
[gmx-users] pmf_calculation Justin A. Lemkul
[gmx-users] pmf_calculation shahid nayeem
[gmx-users] pmf_calculation Justin A. Lemkul
[gmx-users] Possible bug in g_hbond with implicit solvent Justin A. Lemkul
[gmx-users] Possible bug in g_hbond with implicit solvent Mark Abraham
[gmx-users] Possible bug in g_hbond with implicit solvent Justin A. Lemkul
[gmx-users] Possible bug in g_hbond with implicit solvent Mark Abraham
[gmx-users] possible bug in structure factor calculation in g_rdf? Sanku M
[gmx-users] postdoc positions in chemical physics Dr. Vitaly V. Chaban
[gmx-users] Problem of Kinetic Energy Size Zheng
[gmx-users] Problem of Kinetic Energy Mark Abraham
[gmx-users] Re: Problem of Kinetic Energy Size Zheng
[gmx-users] Problem of Kinetic Energy Size Zheng
[gmx-users] Problem of Kinetic Energy Mark Abraham
[gmx-users] problem with g_density -center Sanku M
[gmx-users] problem with g_density -center Justin A. Lemkul
[gmx-users] problem with g_density -center chris.neale at utoronto.ca
Re: [gmx-users] problem with g_density -center wibke.sudholt at cloudbroker.com
[gmx-users] Problem with temperature and stochastic dynamics in FEP Mark Abraham
[gmx-users] Problem with temperature and stochastic dynamics in FEP Mark Abraham
[gmx-users] Problem with temperature and stochastic dynamics in FEP Mark Abraham
[gmx-users] Problem with temperature and stochastic dynamics in FEP Justin A. Lemkul
[gmx-users] Problem with temperature and stochastic dynamics in FEP Justin A. Lemkul
[gmx-users] Problem with temperature and stochastic dynamics in FEP Justin A. Lemkul
[gmx-users] Problem with temperature and stochastic dynamics in FEP Justin A. Lemkul
[gmx-users] Problem with temperature and stochastic dynamics in FEP Justin A. Lemkul
[gmx-users] Problem with temperature and stochastic dynamics in FEP Justin A. Lemkul
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Problem with temperature and stochastic dynamics in FEP Sanku M
[gmx-users] Re: PRODRG tools René Pool
[gmx-users] PRODRG topology Marzinek, Jan
[gmx-users] PRODRG topology Justin A. Lemkul
[gmx-users] proper dihedral types in the topology ZHANG Lu
[gmx-users] protein ligand Ragothaman Yennamalli
[gmx-users] protein ligand Mark Abraham
[gmx-users] PS_PC system Du Jiangfeng (BIOCH)
[gmx-users] PS_PC system Justin A. Lemkul
[gmx-users] Pull Simulation: Force spike on F vs X output and extension stall Natalie Stephenson
[gmx-users] Pull Simulation: Force spike on F vs X output and extension stall Justin A. Lemkul
[gmx-users] Recommended parameters for NVE simulation of SPCE water Michael Shirts
[gmx-users] Re: Recommended parameters for NVE simulation of SPCE water Andrew DeYoung
[gmx-users] Recommended parameters for NVE simulation of SPCE water Michael Shirts
Re: Re: [gmx-users] Recommended parameters for NVE simulation of SPCE water wibke.sudholt at cloudbroker.com
[gmx-users] reference structure of g_rms Hsin-Lin Chiang
[gmx-users] reference structure of g_rms Mark Abraham
[gmx-users] reference structure of g_rms Hsin-Lin Chiang
[gmx-users] reference structure of g_rms Hsin-Lin Chiang
[gmx-users] reference structure of g_rms Tsjerk Wassenaar
[gmx-users] reference structure of g_rms Hsin-Lin Chiang
[gmx-users] reg g_sas vidhya sankar
[gmx-users] reg g_sas Justin A. Lemkul
[gmx-users] reg genion vidhya sankar
[gmx-users] reg genion Justin A. Lemkul
[gmx-users] reg pullf.xvg vidhya sankar
[gmx-users] reg pullf.xvg Justin A. Lemkul
[gmx-users] Regarding Equilibration Ravi Kumar Venkatraman
[gmx-users] Regarding Equilibration Justin A. Lemkul
[gmx-users] Regarding g_sham bipin singh
[gmx-users] Regarding g_sham bipin singh
[gmx-users] Regarding g_sham lina
[gmx-users] Regarding g_sham bipin singh
[gmx-users] Regarding g_sham:Please reply bipin singh
[gmx-users] Regarding g_sham:Please reply Mark Abraham
[gmx-users] regarding genbox Ravi Kumar Venkatraman
[gmx-users] regarding genbox Justin A. Lemkul
[gmx-users] regarding genbox Mark Abraham
[gmx-users] Regarding generating topology file. Ravi Kumar Venkatraman
[gmx-users] Regarding generating topology file. Mark Abraham
[gmx-users] Regarding generating topology file. Bruce D. Ray
[gmx-users] Regarding mdrunfor small organic molecules Ravi Kumar Venkatraman
[gmx-users] Regarding mdrunfor small organic molecules Justin A. Lemkul
[gmx-users] Re: Regarding mdrunfor small organic molecules Ravi Kumar Venkatraman
[gmx-users] Regarding mdrunfor small organic molecules Justin A. Lemkul
[gmx-users] Regarding orientation restraints Nitin Agrawal
[gmx-users] Regarding orientation restraints Justin A. Lemkul
[gmx-users] Regarding orientation restraints Nitin Agrawal
[gmx-users] Regarding parametrisation Ravi Kumar Venkatraman
[gmx-users] Regarding parametrisation Justin A. Lemkul
[gmx-users] Regarding PCA and FEL bipin singh
[gmx-users] Regarding PCA and Free energy landscape bipin singh
[gmx-users] Regarding PCA and Gibbs Free energy landscape bipin singh
[gmx-users] Regarding Segmentation fault during mdrun_d Ravi Kumar Venkatraman
[gmx-users] Regarding Segmentation fault during mdrun_d lina
[gmx-users] Regarding Segmentation fault during mdrun_d Mark Abraham
[gmx-users] Regarding xpm2ps bipin singh
[gmx-users] Regarding xpm2ps Justin A. Lemkul
[gmx-users] Regarding xpm2ps bipin singh
[gmx-users] Regarding xpm2ps Justin A. Lemkul
[gmx-users] Regarding xpm2ps bipin singh
[gmx-users] Regarding xpm2ps Justin A. Lemkul
[gmx-users] Regarding xpm2ps bipin singh
[gmx-users] Regarding xpm2ps Justin A. Lemkul
[gmx-users] Regarding xpm2ps bipin singh
[gmx-users] Regarding xtc Ravi Kumar Venkatraman
[gmx-users] Regarding xtc Justin A. Lemkul
[gmx-users] regarding xtc file Ravi Kumar Venkatraman
[gmx-users] regarding xtc file Mark Abraham
[gmx-users] remove the atom clashes-reg ITHAYARAJA
[gmx-users] remove the atom clashes-reg Mark Abraham
[gmx-users] Restart a simulation from a power source failure Luís Pereira
[gmx-users] Restart a simulation from a power source failure Justin A. Lemkul
[gmx-users] Restart a simulation from a power source failure Luís Pereira
[gmx-users] Restart a simulation from a power source failure Justin A. Lemkul
[gmx-users] restarting a crashed job Payman Pirzadeh
[gmx-users] restarting a crashed job Mark Abraham
Re: [gmx-users] Re: Re：the mdp parameters for lo calpressure calculation using gromacs-4.0.2_localpressure wibke.sudholt at cloudbroker.com
[gmx-users] Re: Re：the mdp parameters for localpressure calculation using gromacs-4.0.2_localpressure Jianguo Li
[gmx-users] RMS force is very large for shell MD zhongjin
[gmx-users] Re: RTILs Dr. Vitaly V. Chaban
[gmx-users] running at higher temperatures Ragothaman Yennamalli
[gmx-users] running at higher temperatures Kukol, Andreas
[gmx-users] secondary structure propensities of residues César Ávila
[gmx-users] secondary structure propensities of residues Mark Abraham
[gmx-users] secondary structure propensities of residues César Ávila
[gmx-users] secondary structure propensities of residues Mark Abraham
[gmx-users] Segmentation fault after mdrun for MD simulation rainy908
[gmx-users] Segmentation fault after mdrun for MD simulation Justin A. Lemkul
[gmx-users] Segmentation fault after mdrun for MD simulation rainy908
[gmx-users] Segmentation fault after mdrun for MD simulation Mark Abraham
[gmx-users] Selenomethionine in pdb file R.Vidya Rajendran (10PHD013)
[gmx-users] Selenomethionine in pdb file Mark Abraham
[gmx-users]Self-defined force-field problem, atomtype Nr not found Ye Yang
[gmx-users]Self-defined force-field problem, atomtype Nr not found Justin A. Lemkul
[gmx-users]Self-defined force-field problem, atomtype Nr not found Ye Yang
[gmx-users]Self-defined force-field problem, atomtype Nr not found Justin A. Lemkul
[gmx-users]Self-defined force-field problem, atomtype Nr not found Ye Yang
[gmx-users]Self-defined force-field problem, atomtype Nr not found Justin A. Lemkul
[gmx-users] sequence of mdrun commands Yongchul Chung
[gmx-users] sequence of mdrun commands Justin A. Lemkul
[gmx-users] sequence of mdrun commands Tsjerk Wassenaar
[gmx-users] sequence of mdrun commands Yongchul Chung
[gmx-users] setting vdw cutoff with specific force-filed? Yun Shi
[gmx-users] setting vdw cutoff with specific force-filed? Justin A. Lemkul
[gmx-users] setting vdw cutoff with specific force-filed? Mark Abraham
[gmx-users] setting vdw cutoff with specific force-filed? Yun Shi
[gmx-users] setting vdw cutoff with specific force-filed? Justin A. Lemkul
[gmx-users] Re: setting vdw cutoff with specific force-filed? Yun Shi
[gmx-users] simulation at higher temperatures arun kumar
[gmx-users] simulation at higher temperatures Justin A. Lemkul
[gmx-users] simulation at higher temperatures Justin A. Lemkul
[gmx-users] simulation at higher temperatures gmx-users Digest, Vol 88, Issue 167 arun kumar
[gmx-users] Slicing .gro file geometry shikha nangia
[gmx-users] Slicing .gro file geometry Mark Abraham
[gmx-users] Sorry for the autoreplies! Wibke Sudholt
[gmx-users] spatial distribution function in a binary solvent mixture dbiswal at ucalgary.ca
[gmx-users] spatial distribution function in a binary solvent mixture chris.neale at utoronto.ca
[gmx-users] spatial distribution function in a binary solvent mixture chris.neale at utoronto.ca
[gmx-users] spatial distribution function in a binary solvent mixture dbiswal at ucalgary.ca
[gmx-users] strange vdw energy from rerun with GBSA model. Da-Wei Li
[gmx-users] strange vdw energy from rerun with GBSA model. Mark Abraham
[gmx-users] strange vdw energy from rerun with GBSA model. Da-Wei Li
[gmx-users] strange vdw energy from rerun with GBSA model. Mark Abraham
[gmx-users] strange vdw energy from rerun with GBSA model. Da-Wei Li
[gmx-users] strange vdw energy from rerun with GBSA model. Mark Abraham
[gmx-users] strange vdw energy from rerun with GBSA model. Da-Wei Li
[gmx-users] strange vdw energy from rerun with GBSA model. Justin A. Lemkul
[gmx-users] strange vdw energy from rerun with GBSA model. Da-Wei Li
[gmx-users] strange vdw energy from rerun with GBSA model. Justin A. Lemkul
[gmx-users] strange vdw energy from rerun with GBSA model. Da-Wei Li
[gmx-users] strange vdw energy from rerun with GBSA model. Mark Abraham
[gmx-users] strange vdw energy from rerun with GBSA model. Da-Wei Li
[gmx-users] sugar dihedral parameters Yun Shi
[gmx-users] sugar dihedral parameters Justin A. Lemkul
[gmx-users] suggestion that mdrun should ensure npme < the numberof processes Carsten Kutzner
[gmx-users] suggestion that mdrun should ensure npme < the number of processes chris.neale at utoronto.ca
[gmx-users] surface area calculations for MARTINI Michael Daily
[gmx-users] SWM4-NDP or SWM4-DP water model is needed. zhongjin
[gmx-users] SWM4-NDP or SWM4-DP water model is needed. Justin A. Lemkul
[gmx-users] SWM4-NDP WATER MODEL AND IONS zhongjin
[gmx-users] SWM4-NDP WATER MODEL AND IONS D.G. Sprous, PhD
[gmx-users] termini modification Vijayaraj
[gmx-users] termini modification lina
[gmx-users] termini modification Justin A. Lemkul
[gmx-users] the density does not stablize xiaowu759
[gmx-users] the density does not stablize Mark Abraham
[gmx-users] the mdp parameters for localpressure calculation using gromacs-4.0.2_localpressure Amit Choubey
[gmx-users] the mdp parameters for localpressure calculation using gromacs-4.0.2_localpressure Jianguo Li
[gmx-users] the mdp parameters for localpressure calculation using gromacs-4.0.2_localpressure KONG Xian
[gmx-users] the mdp parameters for localpressure calculation using gromacs-4.0.2_localpressure KONG Xian
[gmx-users] to clear up the confusion regarding fudge LJ and QQ Gavin Melaugh
[gmx-users] To Justin vidhya sankar
[gmx-users] To Justin Justin A. Lemkul
[gmx-users] To modify PRODRG-generated .itp file? Yun Shi
[gmx-users] To modify PRODRG-generated .itp file? Justin A. Lemkul
[gmx-users] Topology for a new ligand Kavyashree M
[gmx-users] Topology for a new ligand Justin A. Lemkul
[gmx-users] Topology for a new ligand Kavyashree M
[gmx-users] Topology for a new ligand Justin A. Lemkul
[gmx-users] Topology for a new ligand Mark Abraham
[gmx-users] Total Kinetic Energy And Rotational And Translational Kinetic Energy Size Zheng
[gmx-users] TR: Obtain in a readable format the pairtypes values generated by grompp intra\sa175950
[gmx-users] trjconv - Protein and jumping ligands Steven Neumann
[gmx-users] trjconv - Protein and jumping ligands Justin A. Lemkul
[gmx-users] Trouble installing mdrun-gpu from gromacs 4.5.4 package Justin A. Lemkul
[gmx-users] Trouble installing mdrun-gpu from gromacs 4.5.4 package Андрей Гончар
[gmx-users] Trouble installing mdrun-gpu from gromacs 4.5.4 package Micholas Smith
[gmx-users] Trouble installing mdrun-gpu from gromacs 4.5.4 package Micholas Smith
[gmx-users] Trouble installing mdrun-gpu from gromacs 4.5.4 package Micholas Smith
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Justin A. Lemkul
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Peter C. Lai
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Justin A. Lemkul
[gmx-users] Tutorial Justin A. Lemkul
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Sara baretller
[gmx-users] Tutorial Justin A. Lemkul
[gmx-users] umbrella sampling using replica exchange Sanku M
[gmx-users] umbrella sampling using replica exchange Justin A. Lemkul
[gmx-users] Use different fudgeLJ and fudgeQQ values in simulations with the AMBER force field Mark Abraham
[gmx-users] Use different fudgeLJ and fudgeQQ values in simulations with the AMBER force field intra\sa175950
[gmx-users] use of the mailing list Mark Abraham
[gmx-users] use of the mailing list Junior Nebeker
[gmx-users] use of the mailing list Mark Abraham
[gmx-users] use of the mailing list Amit Choubey
[gmx-users] use of the mailing list Junior Nebeker
[gmx-users] Using genbox to REMOVE solvent Michael Daily
[gmx-users] Using genbox to REMOVE solvent Mark Abraham
[gmx-users] Using genbox to REMOVE solvent Michael Daily
[gmx-users] Using genbox to REMOVE solvent Michael Daily
[gmx-users] validation of ligand parameters Yun Shi
[gmx-users] Velocity of atom Nilesh Dhumal
[gmx-users] Velocity of atom Justin A. Lemkul
[gmx-users] Velocity autocorrelation function Nilesh Dhumal
[gmx-users] Velocity autocorrelation function Elton Carvalho
[gmx-users] Velocity autocorrelation function Dommert Florian
[gmx-users] Viscosity calculations Rini Gupta
[gmx-users] Viscosity units Rini Gupta
[gmx-users] Viscosity units: Please Reply Rini Gupta
[gmx-users] VMD_PLUGIN_PATH PAUL NEWMAN
[gmx-users] VMD_PLUGIN_PATH Mark Abraham
[gmx-users] Re: VMD_PLUGIN_PATH PAUL NEWMAN
[gmx-users] Re: VMD_PLUGIN_PATH Mark Abraham
[gmx-users] vsites with NAC and opls chris.neale at utoronto.ca
[gmx-users] VSMP cluster performance changes with time Anupam Nath Jha
[gmx-users] VSMP cluster performance changes with time Mark Abraham
[gmx-users] VSMP cluster performance changes with time Anupam Nath Jha
[gmx-users] Warning and Notes in Grompp for minimization meisam valizadeh kiamahalleh
[gmx-users] Warning and Notes in Grompp for minimization Justin A. Lemkul
[gmx-users] Re: Warning and Notes in Grompp for minimization meisam valizadeh kiamahalleh
[gmx-users] Re: Warning and Notes in Grompp for minimization Mark Abraham
[gmx-users] which charge is used in gromacs program GZ Zhang
[gmx-users] which charge is used in gromacs program Justin A. Lemkul
[gmx-users] wibke.sudholt spam needs to stop chris.neale at utoronto.ca
[gmx-users] Прочитайте ваше сообщение или оно будет удалено! Badoo
[gmx-users] У вас новое сообщение на Badoo! Посмотреть его сейчас... Badoo
[gmx-users] 答复: Re：the mdp parameters for localpressure calculation using gromacs-4.0.2_localpressure KONG Xian

Last message date: Wed Aug 31 23:20:19 CEST 2011
Archived on: Thu Nov 14 12:11:30 CET 2013

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