[gmx-users] Regarding PCA and Gibbs Free energy landscape
bipinelmat at gmail.com
Wed Aug 10 07:21:53 CEST 2011
I have done PCA using cartesian coordinates by the help of
gromacs(g_covar and g_anaeig),
then using the 2-d projection of trajectory on first two eigenvectors
as reaction coordinates,I have calculated a 2-d representation of the
gibbs free energy landscape using gromacs.Now
on this landscape I want to map the conformation(structures from the
of the protein onto the different region(for eg:minima)of this landscape.
Please suggest how can I perform this task.....
More information about the gromacs.org_gmx-users