[gmx-users] Selenomethionine in pdb file

[Mark Abraham]

On 11/08/2011 2:10 PM, R.Vidya Rajendran (10PHD013) wrote:
> Hello Friends,
>
> I would like to do simulation of a protein containing
> 'selenomethionine' [MSE] in coordinate file, during the first step of
> pdb2gmx this residue is not recognizing by any of the force field and
> getting fatal error 'Residue 'MSE' not found in residue topology
> database'.
>
> Please help me to rectify this problem

See http://www.gromacs.org/Documentation/Errors, like a recent version 
of GROMACS will have suggested that you do.

Mark
>
> tahnks.
>
>
> regards
> vidya