[gmx-users] do_dssp

Justin A. Lemkul jalemkul at vt.edu
Sat Aug 13 13:06:57 CEST 2011

afsaneh maleki wrote:
> Hi,
> I'm trying to use do_dssp of gromacs 4.5.4 in fedora core .
> I did processes of Download , Uncompress and Compile the source code as 
> the following
> unzip dsspcmbi.zip
> cd dssp
> [root at localhost dssp]# ./DsspCompileGCC
> That i got this message:
> Running script to compile the CMBI version of DSSP, please wait...
> /usr/bin/ld: cannot find -lm
> collect2: ld returned 1 exit status
> Type dsspcmbi PDBSourcefile DSSPDestinationfile to run the program...
> I googled but i don't find clear way to solve this problem.
> can help me?

Really?  All the Google results seem to point to the same solution involving 
installing glibc-devel or some such suitably named package for whatever your 
system is.

Otherwise, contact the DSSP developers so they can tell you the prerequisites.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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