[gmx-users] -ter option with pdb2gmx

[Justin A. Lemkul]

Vijayaraj wrote:
> Hello,
> 
> I am trying to use "-ter" with the pdb2gmx command, seems its not 
> working fine.
> 
>  >pdb2gmx -f <file.pdb> -o <file.gro. -p <file.top> -ter
> 

If this is your command line it is severely broken.

> I also used "-inter" option, its not working.

Please define "not working."  It's working fine for me.

> I am using 4.5.4 version. any help would be greatly appreciated.
> 

We can assist you only if you provide useful diagnostics of what (actual) 
command you entered, what the output was, and why it was not what you expected.

-Justin

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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