[gmx-users] gd_29 or gd_41 ?

[Yun Shi]

Hi,

For a H-NL-CH1-CH2 (H1-N-CA-C) dihedral angle in a N-terminal MET, why would
pdb2gmx automatically assign gd_29 ?

In /gromos53a6.ff/ffbonded.itp, it appears:

#define gd_29     0.000       3.77          3
; -C,CHn,SI-      0.9
;
 ...

#define gd_41     0.000       3.77          6
; -CHn-NT-  0.9
;
 ...

Thanks,

Yun Shi
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