[gmx-users] energy_terms

[Mark Abraham]

On 17/12/2011 5:25 PM, balaji nagarajan wrote:
> Dear Users !
>
> I have used the energy group option to split the energy terms , for 
> the protein and the water.

You have split the *non-bonded* terms.

>
> It gives all the terms ,
>
> protein-protein , water-water , water-protein .
>
> I have a doubt ,
> the distance and the angle are taken for both water and the protein ,

I don't see what distance and angle you mean.

>
> how one can get these energy terms for protein alone.

What energy terms do you want? You have the intra-protein non-bonded 
energies above.

Mark
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20111217/14457798/attachment.html>