[gmx-users] segmentation fault: g_velacc
ckutzne at gwdg.de
Tue Feb 1 14:14:03 CET 2011
the problem is fixed now in the release-4-0-patches branch.
On Feb 1, 2011, at 2:00 PM, Carsten Kutzner wrote:
> apparently this bug fix made it to 4.5, but not to 4.0.
> I will apply the fix also there.
> On Feb 1, 2011, at 1:58 PM, Justin A. Lemkul wrote:
>> Vigneshwar Ramakrishnan wrote:
>>> Dear All,
>>> I am using the gromacs 4.0.7 version and I was trying to calculate the momentum autocorrelation function by using the -m flag. However, I get a segmentation fault as follows:
>>> trn version: GMX_trn_file (double precision)
>>> Reading frame 0 time 0.000 Segmentation fault
>>> When I don't use the -m option, I have no problem.
>>> Upon searching the userslist, I found this thread: http://lists.gromacs.org/pipermail/gmx-users/2010-October/054813.html and a patch, but I don't find any related bugs reported elsewhere. So, I am just wondering if I sould go ahead and use the patch or if there could be something else that is wrong. Will appreciate any kind of pointers.
>> Either apply the patch or upgrade to a newer version of Gromacs that contains this bug fix.
>>> Sincerely, Vignesh
>>> Graduate Student,
>>> Dept. of Chemical & Biomolecular Engg,
>>> National University of Singapore,
>>> "Strive for Excellence, Never be satisfied with the second Best!!"
>>> I arise in the morning torn between a desire to improve the world and a desire to enjoy the world. This makes it hard to plan the day. (E.B. White)
>> Justin A. Lemkul
>> Ph.D. Candidate
>> ICTAS Doctoral Scholar
>> MILES-IGERT Trainee
>> Department of Biochemistry
>> Virginia Tech
>> Blacksburg, VA
>> jalemkul[at]vt.edu | (540) 231-9080
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> Dr. Carsten Kutzner
> Max Planck Institute for Biophysical Chemistry
> Theoretical and Computational Biophysics
> Am Fassberg 11, 37077 Goettingen, Germany
> Tel. +49-551-2012313, Fax: +49-551-2012302
> gmx-users mailing list gmx-users at gromacs.org
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
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Dr. Carsten Kutzner
Max Planck Institute for Biophysical Chemistry
Theoretical and Computational Biophysics
Am Fassberg 11, 37077 Goettingen, Germany
Tel. +49-551-2012313, Fax: +49-551-2012302
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