[gmx-users] segmentation fault: g_velacc

[Vigneshwar Ramakrishnan]

Thanks very much, Dr. Kutzner!

On Tue, Feb 1, 2011 at 9:14 PM, Carsten Kutzner <ckutzne at gwdg.de> wrote:

> Hi Vigneshwar,
>
> the problem is fixed now in the release-4-0-patches branch.
>
> Carsten
>
>
> On Feb 1, 2011, at 2:00 PM, Carsten Kutzner wrote:
>
> > Hi,
> >
> > apparently this bug fix made it to 4.5, but not to 4.0.
> > I will apply the fix also there.
> >
> > Carsten
> >
> > On Feb 1, 2011, at 1:58 PM, Justin A. Lemkul wrote:
> >
> >>
> >>
> >> Vigneshwar Ramakrishnan wrote:
> >>> Dear All,
> >>> I am using the gromacs 4.0.7 version and I was trying to calculate the
> momentum autocorrelation function by using the -m flag. However, I get a
> segmentation fault as follows:
> >>> trn version: GMX_trn_file (double precision)
> >>> Reading frame       0 time    0.000   Segmentation fault
> >>> When I don't use the -m option, I have no problem.
> >>> Upon searching the userslist, I found this thread:
> http://lists.gromacs.org/pipermail/gmx-users/2010-October/054813.html and
> a patch, but I don't find any related bugs reported elsewhere. So, I am just
> wondering if I sould go ahead and use the patch or if there could be
> something else that is wrong. Will appreciate any kind of pointers.
> >>
> >> Either apply the patch or upgrade to a newer version of Gromacs that
> contains this bug fix.
> >>
> >> -Justin
> >>
> >>> Sincerely, Vignesh
> >>> --
> >>> R.Vigneshwar
> >>> Graduate Student,
> >>> Dept. of Chemical & Biomolecular Engg,
> >>> National University of Singapore,
> >>> Singapore
> >>> "Strive for Excellence, Never be satisfied with the second Best!!"
> >>> I arise in the morning torn between a desire to improve the world and a
> desire to enjoy the world. This makes it hard to plan the day. (E.B. White)
> >>
> >> --
> >> ========================================
> >>
> >> Justin A. Lemkul
> >> Ph.D. Candidate
> >> ICTAS Doctoral Scholar
> >> MILES-IGERT Trainee
> >> Department of Biochemistry
> >> Virginia Tech
> >> Blacksburg, VA
> >> jalemkul[at]vt.edu | (540) 231-9080
> >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
> >>
> >> ========================================
> >> --
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> >
> >
> > --
> > Dr. Carsten Kutzner
> > Max Planck Institute for Biophysical Chemistry
> > Theoretical and Computational Biophysics
> > Am Fassberg 11, 37077 Goettingen, Germany
> > Tel. +49-551-2012313, Fax: +49-551-2012302
> > http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne
> >
> >
> >
> >
> > --
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>
> --
> Dr. Carsten Kutzner
> Max Planck Institute for Biophysical Chemistry
> Theoretical and Computational Biophysics
> Am Fassberg 11, 37077 Goettingen, Germany
> Tel. +49-551-2012313, Fax: +49-551-2012302
> http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne
>
>
>
>
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>



-- 
R.Vigneshwar
Graduate Student,
Dept. of Chemical & Biomolecular Engg,
National University of Singapore,
Singapore

"Strive for Excellence, Never be satisfied with the second Best!!"

I arise in the morning torn between a desire to improve the world and a
desire to enjoy the world. This makes it hard to plan the day. (E.B. White)
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