[gmx-users] Error Messages

[Justin A. Lemkul]

simon sham wrote:
> Hi,
> I  run GROMACS in parallel mode.
> The first two jobs that I submitted are still running. However, when I 
> tried to
> submit the third job, and stopped for the following reason:
> 
> Fatal error:
> There is no domain decomposition for 10 nodes that is compatible with 
> the given box and a minimum cell size of 1.025 nm
> Change the number of nodes or mdrun option -rcon or -dds or your LINCS 
> settings
> Look in the log file for details on the domain decomposition
> 
> What does the error message mean?
> 

http://www.gromacs.org/Documentation/Errors#There_is_no_domain_decomposition_for_n_nodes_that_is_compatible_with_the_given_box_and_a_minimum_cell_size_of_x_nm

-Justin

> Thanks for your help.
> 
> Best,
> 
> Simon Sham
> 
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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