[gmx-users] Error Messages

Justin A. Lemkul jalemkul at vt.edu
Sat Feb 5 00:13:14 CET 2011

simon sham wrote:
> Hi,
> I  run GROMACS in parallel mode.
> The first two jobs that I submitted are still running. However, when I 
> tried to
> submit the third job, and stopped for the following reason:
> Fatal error:
> There is no domain decomposition for 10 nodes that is compatible with 
> the given box and a minimum cell size of 1.025 nm
> Change the number of nodes or mdrun option -rcon or -dds or your LINCS 
> settings
> Look in the log file for details on the domain decomposition
> What does the error message mean?



> Thanks for your help.
> Best,
> Simon Sham


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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