[gmx-users] PRODRG

Mark Abraham Mark.Abraham at anu.edu.au
Wed Feb 9 17:43:17 CET 2011

On 10/02/2011 3:40 AM, mohsen ramezanpour wrote:
> Dear Users
> I am using PRODRG to make topology for my drug
> It addes Hydrogenes but in wrong way.
> My Nitrogen atom is bonded to 2 Carbos,
> and PRODRG addes 2 Hydrogenes to it .
> Please let me know how can I do.
> Thanks in advance

This is not really the forum to get help about that. You need to read 
how to PRODRG needs input, and supply something it can deal with. Then 
do a whole bunch more work testing what it produced.


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