[gmx-users] PRODRG

jorge_quintero at ciencias.uis.edu.co jorge_quintero at ciencias.uis.edu.co
Wed Feb 9 18:42:33 CET 2011

I think that is better to use antechamber tools.

> On 10/02/2011 3:40 AM, mohsen ramezanpour wrote:
>> Dear Users
>> I am using PRODRG to make topology for my drug
>> It addes Hydrogenes but in wrong way.
>> My Nitrogen atom is bonded to 2 Carbos,
>> and PRODRG addes 2 Hydrogenes to it .
>> Please let me know how can I do.
>> Thanks in advance
> This is not really the forum to get help about that. You need to read
> how to PRODRG needs input, and supply something it can deal with. Then
> do a whole bunch more work testing what it produced.
> Mark
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Jorge R. Quintero
Universidad Industrial de Santander
Bucaramanga, Santander - Colombia

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