[gmx-users] top2psf.pl issue: trying to use vmd w/ MARTINI protein

John jzintsma at gmail.com
Tue Feb 15 17:13:40 CET 2011


While trying to visualize a MARTINI protein/trajectory in VMD, I came across
the script top2psf.pl. i attempted to use it as:

> ./top2psf.pl -i martini.top -o martini.psf
this generates the error:
> Cannot open atoms for reading: No such file or directory

Anyone encounter this or have any suggestions for visualizing MARTINI
proteins in VMD? Thank you for any help.

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