[gmx-users] top2psf.pl issue: trying to use vmd w/ MARTINI protein

[Justin A. Lemkul]

John wrote:
> Hello,
> 
> While trying to visualize a MARTINI protein/trajectory in VMD, I came 
> across the script top2psf.pl <http://top2psf.pl>. i attempted to use it as:
> 
>  > ./top2psf.pl <http://top2psf.pl> -i martini.top -o martini.psf
> this generates the error:
>  > Cannot open atoms for reading: No such file or directory
> 
> Anyone encounter this or have any suggestions for visualizing MARTINI 
> proteins in VMD? Thank you for any help.

The required input is the actual protein topology (usually an #included .itp 
file within the .top).

-Justin

>  
> -j
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================