[gmx-users] percentage of secondary structure
Mark.Abraham at anu.edu.au
Tue Jan 4 13:59:26 CET 2011
On 4/01/2011 11:38 PM, ahmet yıldırım wrote:
> Dear Mark,
> I will do by using the g_analyze tool but I do not know how to use it.
There's a section in Appendix D of the manual for each tool, or you can
use the -h argument to the tool to get the same information.
Either way, you haven't got the right tool. Hint: it's a "protein
> 2011/1/4 Mark Abraham <Mark.Abraham at anu.edu.au
> <mailto:Mark.Abraham at anu.edu.au>>
> On 4/01/2011 8:33 PM, ahmet yıldırım wrote:
> How can I calculate the percentages (alpha helix, beta sheet,
> coil ...) of secondary structure?
> Look in manual section 7.4 for a suitable tool.
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> Ahmet YILDIRIM
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