[gmx-users] percentage of secondary structure

[Mark Abraham]

On 4/01/2011 11:38 PM, ahmet yıldırım wrote:
> Dear Mark,
>
> I will do by using the g_analyze tool but I do not know how to use it.

There's a section in Appendix D of the manual for each tool, or you can 
use the -h argument to the tool to get the same information.

Either way, you haven't got the right tool. Hint: it's a "protein 
specific analysis"

Mark

>
> Thanks
>
> 2011/1/4 Mark Abraham <Mark.Abraham at anu.edu.au 
> <mailto:Mark.Abraham at anu.edu.au>>
>
>     On 4/01/2011 8:33 PM, ahmet yıldırım wrote:
>
>         Hi,
>
>         How can I calculate the percentages (alpha helix, beta sheet,
>         coil ...) of secondary structure?
>
>
>     Look in manual section 7.4 for a suitable tool.
>
>     Mark
>     -- 
>     gmx-users mailing list gmx-users at gromacs.org
>     <mailto:gmx-users at gromacs.org>
>     http://lists.gromacs.org/mailman/listinfo/gmx-users
>     Please search the archive at
>     http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>     Please don't post (un)subscribe requests to the list. Use the www
>     interface or send it to gmx-users-request at gromacs.org
>     <mailto:gmx-users-request at gromacs.org>.
>     Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
>
>
>
> -- 
> Ahmet YILDIRIM

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110104/3f7385a5/attachment.html>