January 2011 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Sat Jan 1 00:57:48 CET 2011
Ending: Mon Jan 31 23:52:36 CET 2011
Messages: 1007

• [gmx-users] electron density   Jianhui Tian
  • [gmx-users] electron density   Justin A. Lemkul
    • [gmx-users] Happy new year   Hassan Shallal
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   leila karami
• [gmx-users] How to calculate rdf for some group respect to one reference axis   英雄不再寂寞
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   leila karami
• [gmx-users] g_tune_pme big standard deviation in perf.out output   Carsten Kutzner
• [gmx-users] Major code reorganization in git coming up   Tsjerk Wassenaar
• [gmx-users] Umbrella sampling   Nilesh Dhumal
  • [gmx-users] Umbrella sampling   Justin A. Lemkul
    • [gmx-users] Umbrella sampling   Nilesh Dhumal
• [gmx-users] electron density   Jianhui Tian
  • [gmx-users] electron density   Justin A. Lemkul
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc message   chris.neale at utoronto.ca
• [gmx-users] Umbrella sampling   chris.neale at utoronto.ca
• [gmx-users] electron density   Jianhui Tian
• [gmx-users] how to simulate linear rigid rod   Sanku M
  • [gmx-users] how to simulate linear rigid rod   David van der Spoel
• [gmx-users] The sum of the O-H distancesof the backbone hydrogen bonds ROH   sreelakshmi ramesh
  • [gmx-users] The sum of the O-H distancesof the backbone hydrogen bonds ROH   Mark Abraham
    • [gmx-users] The sum of the O-H distancesof the backbone hydrogen bonds ROH   sreelakshmi ramesh
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc message   leila karami
• [gmx-users] Interaction_between_protein_small_molecule   shahid nayeem
  • [gmx-users] Interaction_between_protein_small_molecule   Justin A. Lemkul
• [gmx-users] distance between two atoms of diff protein residue   sreelakshmi ramesh
  • [gmx-users] distance between two atoms of diff protein residue   Justin A. Lemkul
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc message   chris.neale at utoronto.ca
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   leila karami
  • [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   Justin A. Lemkul
• [gmx-users] Optimization of the box size during an energy minimization?   Tsjerk Wassenaar
• [gmx-users] all_force.xvg   Solomon Berman
  • [gmx-users] all_force.xvg   Justin A. Lemkul
• [gmx-users] Thiazolidinedione Tautomers   Nancy
  • [gmx-users] Thiazolidinedione Tautomers   Mark Abraham
    • [gmx-users] Thiazolidinedione Tautomers   Nancy
      • [gmx-users] Thiazolidinedione Tautomers   Mark Abraham
• [gmx-users] Signal: Segmentation faul   shikha agarwal
  • [gmx-users] Signal: Segmentation faul   Amit Choubey
  • [gmx-users] Signal: Segmentation faul   Justin A. Lemkul
• [gmx-users] NPT   mohsen ramezanpour
  • [gmx-users] NPT   Justin A. Lemkul
    • [gmx-users] NPT   mohsen ramezanpour
      • [gmx-users] NPT   Justin A. Lemkul
• Re: [gmx-users] NPT   wibke.sudholt at cloudbroker.com
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   leila karami
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   leila karami
  • [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   Tsjerk Wassenaar
• [gmx-users] g_sas values for peptide in water and in DPC micelle   sa
  • [gmx-users] g_sas values for peptide in water and in DPC micelle   Justin A. Lemkul
• [gmx-users] Average box size   Navjeet Ahalawat
  • [gmx-users] Average box size   Tsjerk Wassenaar
• [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   leila karami
  • [gmx-users] Reordering of water molecules with Na+ ions coordinates in xtc file   Tsjerk Wassenaar
• [gmx-users] eordering of water molecules with Na+ ions coordinates in xtc file   chris.neale at utoronto.ca
• [gmx-users] Trifluoroethanol-Ethanol mixtures study   Marcelo Silva
  • [gmx-users] Trifluoroethanol-Ethanol mixtures study   Mark Abraham
    • [gmx-users] Trifluoroethanol-Ethanol mixtures study   Marcelo Silva
      • [gmx-users] Trifluoroethanol-Ethanol mixtures study   Mark Abraham
• Re: Re: [gmx-users] Trifluoroethanol-Ethanol mixtures study   wibke.sudholt at cloudbroker.com
  • [gmx-users] Email bounce message   Mark Abraham
• [gmx-users] g_mindist   Ramachandran G
  • [gmx-users] g_mindist   Justin A. Lemkul
• [gmx-users] How to get sufactant.gro, sufactant.top,   gromacs
• [gmx-users] How to get sufactant.gro, sufactant.top,   Mark Abraham
• [gmx-users] so difficult problem   mohsen ramezanpour
  • [gmx-users] so difficult problem   Amit Choubey
    • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Amit Choubey
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Amit Choubey
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Tsjerk Wassenaar
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Tsjerk Wassenaar
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Tsjerk Wassenaar
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Mark Abraham
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Justin A. Lemkul
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   mohsen ramezanpour
      • [gmx-users] so difficult problem   Justin A. Lemkul
• [gmx-users] percentage of secondary structure   ahmet yıldırım
  • [gmx-users] percentage of secondary structure   Mark Abraham
    • [gmx-users] percentage of secondary structure   ahmet yıldırım
      • [gmx-users] percentage of secondary structure   Mark Abraham
      • [gmx-users] percentage of secondary structure   ahmet yıldırım
      • [gmx-users] percentage of secondary structure   Justin A. Lemkul
      • [gmx-users] percentage of secondary structure   ahmet yıldırım
      • [gmx-users] percentage of secondary structure   Justin A. Lemkul
      • [gmx-users] percentage of secondary structure   ahmet yıldırım
      • [gmx-users] percentage of secondary structure   Thomas Evangelidis
      • [gmx-users] percentage of secondary structure   Mark Abraham
• [gmx-users] Re: gmx-users Digest, Vol 81, Issue 14   Navjeet Ahalawat
• [gmx-users] Re: Average box size   Navjeet Ahalawat
  • [gmx-users] Re: Average box size   Tsjerk Wassenaar
• [gmx-users] Re: Average box size   Navjeet Ahalawat
  • [gmx-users] Re: Average box size   Tsjerk Wassenaar
• [gmx-users] Simulations on GPU   Francesco Oteri
  • [gmx-users] Simulations on GPU   Rossen Apostolov
    • [gmx-users] Simulations on GPU   Keith Callenberg
      • [gmx-users] Simulations on GPU   Rossen Apostolov
      • [gmx-users] Simulations on GPU   Keith Callenberg
      • [gmx-users] Simulations on GPU   Francesco Oteri
• [gmx-users] help regarding simulation   onetwo
  • [gmx-users] help regarding simulation   Justin A. Lemkul
• [gmx-users] percentage of secondary structure   Justin A. Lemkul
  • [gmx-users] percentage of secondary structure   ahmet yıldırım
• [gmx-users] Constraints and efficency   Elton Carvalho
  • [gmx-users] Constraints and efficency   Mark Abraham
    • [gmx-users] Constraints and efficency   Elton Carvalho
      • [gmx-users] Constraints and efficency   David van der Spoel
• [gmx-users] g_sdf   Nilesh Dhumal
• [gmx-users] CNT   mustafa bilsel
  • [gmx-users] CNT   Justin A. Lemkul
  • [gmx-users] CNT   Mark Abraham
• Re: [gmx-users] CNT   wibke.sudholt at cloudbroker.com
• [gmx-users] g_sdf   Nilesh Dhumal
  • [gmx-users] g_sdf   Justin A. Lemkul
• [gmx-users] query for protein-igand binding energy calculation using LIE and Gromacs simulation   devawati dutta
  • [gmx-users] query for protein-igand binding energy calculation using LIE and Gromacs simulation   Mark Abraham
• [gmx-users] Re:Re: How to get sufactant.gro, sufactant.top, (Mark Abraham)   gromacs
  • [gmx-users] Re:Re: How to get sufactant.gro, sufactant.top, (Mark Abraham)   Mark Abraham
• [gmx-users] Questions concerning Gromacs   Thomas Koller
  • [gmx-users] Questions concerning Gromacs   Mark Abraham
• [gmx-users] nanoparticles   leila separdar
  • [gmx-users] nanoparticles   Mark Abraham
• [gmx-users] Library file in.m2p not found   ahmet yıldırım
  • [gmx-users] Library file in.m2p not found   Mark Abraham
    • [gmx-users] Library file in.m2p not found   ahmet yıldırım
      • [gmx-users] Library file in.m2p not found   Justin A. Lemkul
      • [gmx-users] Library file in.m2p not found   ahmet yıldırım
      • [gmx-users] Library file in.m2p not found   Mark Abraham
• [gmx-users] Query about use of coulombtype for LIE in gromacs   devawati dutta
  • [gmx-users] Query about use of coulombtype for LIE in gromacs   Mark Abraham
• [gmx-users] Questions concerning Gromacs   Thomas Koller
  • [gmx-users] Questions concerning Gromacs   Mark Abraham
• [gmx-users] Warning about (short) potential interruption - moving DNS servers for gromacs.org   Erik Lindahl
• [gmx-users] HFIP solvent box...   sharada
  • [gmx-users] HFIP solvent box...   Justin A. Lemkul
• [gmx-users] gromacs on Lynnfield processors   Guilherme Menegon Arantes
• [gmx-users] How to include FE2+ in ions.itp ?   Tanos Franca
  • [gmx-users] How to include FE2+ in ions.itp ?   Justin A. Lemkul
• [gmx-users] g_msd Utility - (Unexpected) Different Results Depending on Output Flag   Solomon Berman
  • [gmx-users] g_msd Utility - (Unexpected) Different Results Depending on Output Flag   Mark Abraham
• [gmx-users] Sampling windows   Gavin Melaugh
  • [gmx-users] Sampling windows   XAvier Periole
    • [gmx-users] Sampling windows   Gavin Melaugh
      • [gmx-users] Sampling windows   XAvier Periole
      • [gmx-users] Sampling windows   Gavin Melaugh
      • [gmx-users] Sampling windows   XAvier Periole
      • [gmx-users] Sampling windows   Gavin Melaugh
• [gmx-users] md simulation for ternary complex   kala
  • [gmx-users] md simulation for ternary complex   Justin A. Lemkul
• [gmx-users] problem running the demo   Mao Mao
  • [gmx-users] problem running the demo   Justin A. Lemkul
    • [gmx-users] problem running the demo   Mao Mao
      • [gmx-users] problem running the demo   Justin A. Lemkul
      • [gmx-users] problem running the demo   Mao Mao
      • [gmx-users] problem running the demo   Justin A. Lemkul
• Re: Re: [gmx-users] Questions concerning Gromacs   wibke.sudholt at cloudbroker.com
• [gmx-users] Re: Average box size   Navjeet Ahalawat
• [gmx-users] Re: Average box size   Mark Abraham
• [gmx-users] Re:Re: Re: Average box size   Navjeet Ahalawat
  • [gmx-users] Re:Re: Re: Average box size   Tsjerk Wassenaar
• [gmx-users] Question   Thomas Koller
  • [gmx-users] Question   Justin A. Lemkul
  • [gmx-users] Question   Mark Abraham
  • [gmx-users] Question   Mark Abraham
• [gmx-users] Re: [ atomtypes ] are not case sensitive?   Alan Wilter Sousa da Silva
  • [gmx-users] Re: [ atomtypes ] are not case sensitive?   Berk Hess
• [gmx-users] methanol simulation   mustafa bilsel
  • [gmx-users] methanol simulation   Mark Abraham
• [gmx-users] methanol simulation   mustafa bilsel
  • [gmx-users] methanol simulation   Justin A. Lemkul
• [gmx-users] methanol simulation error   mustafa bilsel
  • [gmx-users] methanol simulation error   Justin A. Lemkul
  • [gmx-users] methanol simulation error   Mark Abraham
• Re: [gmx-users] methanol simulation error   wibke.sudholt at cloudbroker.com
• [gmx-users] methanol simulation error   Dallas Warren
• [gmx-users] trjconv with multiple chains   yuanyuan wang
  • [gmx-users] trjconv with multiple chains   Amit Choubey
    • [gmx-users] trjconv with multiple chains   Justin A. Lemkul
  • [gmx-users] trjconv with multiple chains   ms
• [gmx-users] trjconv with multiple chains problem   yuanyuan wang
  • [gmx-users] trjconv with multiple chains problem   Justin A. Lemkul
• [gmx-users] Re: methanol simulation error   mustafa bilsel
  • [gmx-users] Re: methanol simulation error   Justin A. Lemkul
• [gmx-users] number of index elements not multiple of 3, these can not be angle triplet   Carla Jamous
  • [gmx-users] number of index elements not multiple of 3, these can not be angle triplet   Mark Abraham
  • [gmx-users] number of index elements not multiple of 3, these can not be angle triplet   Amit Choubey
    • [gmx-users] number of index elements not multiple of 3, these can not be angle triplet   Carla Jamous
      • [gmx-users] number of index elements not multiple of 3, these can not be angle triplet   Amit Choubey
      • [gmx-users] number of index elements not multiple of 3, these can not be angle triplet   Justin A. Lemkul
• [gmx-users] To make continuous trj in REMD   Qin Qiao
  • [gmx-users] To make continuous trj in REMD   Justin A. Lemkul
    • [gmx-users] To make continuous trj in REMD   Qin Qiao
      • [gmx-users] To make continuous trj in REMD   Justin A. Lemkul
      • [gmx-users] To make continuous trj in REMD   Qin Qiao
      • [gmx-users] To make continuous trj in REMD   Justin A. Lemkul
      • [gmx-users] To make continuous trj in REMD   Qin Qiao
• [gmx-users] inconsistent energies   Vlad Isaev
  • [gmx-users] inconsistent energies   Mark Abraham
  • [gmx-users] Re: inconsistent energies   Vlad Isaev
    • [gmx-users] Re: inconsistent energies   Mark Abraham
• [gmx-users] Ion-Clustering?   Micholas Smith
  • [gmx-users] Ion-Clustering?   Mark Abraham
  • [gmx-users] Ion-Clustering?   Erik Marklund
• [gmx-users] Re: Re: methanol simulation error   mustafa bilsel
  • [gmx-users] Re: Re: methanol simulation error   Justin A. Lemkul
  • [gmx-users] Re: Re: methanol simulation error   Mark Abraham
• [gmx-users] Requesting advice on pressure scaling in a protein-in-membrane system.   Daniel Adriano Silva M
  • [gmx-users] Requesting advice on pressure scaling in a protein-in-membrane system.   Justin A. Lemkul
• [gmx-users] justin   mustafa bilsel
  • [gmx-users] justin   Justin A. Lemkul
    • [gmx-users] error in ffgmxbon.itp   delara aghaie
      • [gmx-users] error in ffgmxbon.itp   Mark Abraham
  • [gmx-users] justin   ms
• [gmx-users] XTC file not being created, while TRR file is   João Rodrigues
  • [gmx-users] XTC file not being created, while TRR file is   Diego Enry
• [gmx-users] 4. Requesting advice on pressure scaling in a protein-in-membrane system. (Daniel Adriano Silva M)   Gerrit Groenhof
• [gmx-users] When will FEP be on GPU?   Szilárd Páll
• [gmx-users] Re: XTC file not being created, while TRR file is   João Rodrigues
• Re: Re: [gmx-users] g_msd Utility - (Unexpected) Different Results Depending on Output Flag   wibke.sudholt at cloudbroker.com
• [gmx-users] order parameters of partially unsaturated chains   Ángel Piñeiro
  • [gmx-users] order parameters of partially unsaturated chains   JAVIER CEREZO BASTIDA
    • [gmx-users] order parameters of partially unsaturated chains   Ángel Piñeiro
• [gmx-users] Nose-hoover T-coupling in REMD   Qin Qiao
• Re: Re: [gmx-users] Nose-hoover T-coupling in REMD   wibke.sudholt at cloudbroker.com
• [gmx-users] Atomype HW not found   trevor brown
• [gmx-users] Atomtpe HW not found-2   trevor brown
  • [gmx-users] Atomtpe HW not found-2   Mark Abraham
• [gmx-users] Pioglitazone Tautomers   Nancy
  • [gmx-users] Pioglitazone Tautomers   Mark Abraham
  • [gmx-users] Pioglitazone Tautomers   Tsjerk Wassenaar
• Re: [gmx-users] Pioglitazone Tautomers   wibke.sudholt at cloudbroker.com
• [gmx-users] Pioglitazone Tautomers   Dallas Warren
• [gmx-users] Water models usage info   trevor brown
• [gmx-users] the calculation time   ahmet yıldırım
• [gmx-users] the calculation time   Mark Abraham
• [gmx-users] Re: trjconv with multiple chains   yuanyuan wang
  • [gmx-users] Re: trjconv with multiple chains   Mark Abraham
  • [gmx-users] Re: trjconv with multiple chains   devicerandom
• [gmx-users] Density of the box   kavya at rishi.serc.iisc.ernet.in
  • [gmx-users] Density of the box   Mark Abraham
    • [gmx-users] Density of the box   kavya at rishi.serc.iisc.ernet.in
      • [gmx-users] Density of the box   Tsjerk Wassenaar
• [gmx-users] truncated LJ potential   Makoto Yoneya
  • [gmx-users] truncated LJ potential   David van der Spoel
    • [gmx-users] truncated LJ potential   Berk Hess
• [gmx-users] Re: Calculating lattice enegies for molecular crystals   Adam Bin Idu Jion
  • [gmx-users] Re: Calculating lattice enegies for molecular crystals   David van der Spoel
• [gmx-users] truncated LJ potential   Makoto Yoneya
  • [gmx-users] truncated LJ potential   Berk Hess
• [gmx-users] Waterbox simulation on GPU   Christian Mötzing
  • [gmx-users] Waterbox simulation on GPU   devicerandom
    • [gmx-users] Waterbox simulation on GPU   Christian Mötzing
    • [gmx-users] Waterbox simulation on GPU   Christian Mötzing
• [gmx-users] Perfluorohexane   Marcelo Silva
  • [gmx-users] Perfluorohexane   Ángel Piñeiro
• [gmx-users] histograms   Nilesh Dhumal
  • [gmx-users] histograms   jalemkul at vt.edu
    • [gmx-users] histograms   Nilesh Dhumal
      • [gmx-users] histograms   jalemkul at vt.edu
      • [gmx-users] histograms   Nilesh Dhumal
      • [gmx-users] histograms   jalemkul at vt.edu
• [gmx-users] t_fileio has initializer but incomplete type? (xtcio.h)   T. Paramo
• [gmx-users] ion jumping out of water box   גדעון לפידות
  • [gmx-users] ion jumping out of water box   Erik Marklund
  • [gmx-users] ion jumping out of water box   jalemkul at vt.edu
    • [gmx-users] ion jumping out of water box   Tsjerk Wassenaar
      • [gmx-users] ion jumping out of water box   Mark Abraham
• [gmx-users] RE : gmx-users Digest, Vol 81, Issue 58   ABEL Stephane 175950
• [gmx-users] perfluorohexane pdb   ABEL Stephane 175950
  • [gmx-users] perfluorohexane pdb   jalemkul at vt.edu
    • [gmx-users] PMF using constraints   Gavin Melaugh
• [gmx-users] perfluorohexane pdb... again   ABEL Stephane 175950
  • [gmx-users] perfluorohexane pdb... again   Marcelo Silva
    • [gmx-users] perfluorohexane pdb... again   Ángel Piñeiro
      • [gmx-users] perfluorohexane pdb... again   Marcelo Silva
      • [gmx-users] perfluorohexane pdb... again   Marcelo Silva
      • [gmx-users] perfluorohexane pdb... again   Ángel Piñeiro
      • [gmx-users] perfluorohexane pdb... again   Marcelo Silva
      • [gmx-users] perfluorohexane pdb... again   Ángel Piñeiro
• [gmx-users] trjconv -fit rot+trans before a pbc? safe way to rotate a trajectory?   Camilo Andrés Jimenez Cruz
  • [gmx-users] trjconv -fit rot+trans before a pbc? safe way to rotate a trajectory?   Roland Schulz
    • [gmx-users] trjconv -fit rot+trans before a pbc? safe way to rotate a trajectory?   Tsjerk Wassenaar
• [gmx-users] truncated LJ potential   Makoto Yoneya
  • [gmx-users] truncated LJ potential   Berk Hess
• [gmx-users] Problem with COM movement   Tomy van Batis
• [gmx-users] Re: question on implicit membrane in gromacs   David van der Spoel
• [gmx-users] Ubuntu Installation   Sergio Manzetti
  • [gmx-users] Ubuntu Installation   Justin A. Lemkul
  • [gmx-users] Ubuntu Installation   Jussi Lehtola
    • [gmx-users] Ubuntu Installation   Sergio Manzetti
  • [gmx-users] Ubuntu Installationync-mailbox><next-undeleted><enter-command>set editor=vim   Manuel Prinz
• [gmx-users] Ubuntu Installation   Justin A. Lemkul
  • [gmx-users] Ubuntu Installation   Sergio Manzetti
    • [gmx-users] Ubuntu Installation   Justin A. Lemkul
  • [gmx-users] Ubuntu Installation   Bogdan Costescu
• [gmx-users] Simulations in vacuo   Zoe Hall
  • [gmx-users] Simulations in vacuo   Mark Abraham
  • [gmx-users] Simulations in vacuo   Erik Marklund
• [gmx-users] RB Dihedrals with ffamber96 in Gromacs 4.5.3?   RJ Nowling
  • [gmx-users] RB Dihedrals with ffamber96 in Gromacs 4.5.3?   Mark Abraham
• [gmx-users] temperature of different atom groups in the system   Vitaly Chaban
  • [gmx-users] temperature of different atom groups in the system   Justin A. Lemkul
• [gmx-users] Geometry-dependent (non-spherically symmetric) potentials   ms
• [gmx-users] van der Walls radius and implicit solvation   Diogo Vila Viçosa
  • [gmx-users] van der Walls radius and implicit solvation   Per Larsson
• [gmx-users] g_density CHARMM   Ramon Guixà
  • [gmx-users] g_density CHARMM   Justin A. Lemkul
    • [gmx-users] g_density CHARMM   Ramon Guixà
      • [gmx-users] g_density CHARMM   Justin A. Lemkul
      • [gmx-users] g_density CHARMM   Ramon Guixà
• [gmx-users] Tautomer Prediction   Nancy
  • [gmx-users] Tautomer Prediction   Mark Abraham
• [gmx-users] perfluorohexane pdb... again   Ángel Piñeiro
• [gmx-users] file heme.rtp   Tanos Franca
  • [gmx-users] file heme.rtp   Justin A. Lemkul
• [gmx-users] problem when calculating the solvation free energy of ARG in water using PME.   Itamar Kass (Med)
• [gmx-users] query for binding energy   devawati dutta
  • [gmx-users] query for binding energy   Justin A. Lemkul
• [gmx-users] Add bridging residue   Edvin Erdtman
  • [gmx-users] Add bridging residue   Justin A. Lemkul
    • Sv: Re: [gmx-users] Add bridging residue   Edvin Erdtman
      • Sv: Re: [gmx-users] Add bridging residue   Justin A. Lemkul
• [gmx-users] (no subject)   harpreet singh
  • [gmx-users] (no subject)   Justin A. Lemkul
• [gmx-users] extending the simulation with modified mdp option   Ramachandran G
  • [gmx-users] extending the simulation with modified mdp option   Justin A. Lemkul
    • [gmx-users] extending the simulation with modified mdp option   Ramachandran G
      • [gmx-users] extending the simulation with modified mdp option   Mark Abraham
      • [gmx-users] extending the simulation with modified mdp option   Justin A. Lemkul
      • [gmx-users] extending the simulation with modified mdp option   Ramachandran G
• [gmx-users] topoloy for CNT   trevor brown
  • [gmx-users] topoloy for CNT   Justin A. Lemkul
• [gmx-users] pdb2gmx: segmentation fault   Kwee Hong
  • [gmx-users] pdb2gmx: segmentation fault   Mark Abraham
    • [gmx-users] pdb2gmx: segmentation fault   Kwee Hong
      • [gmx-users] pdb2gmx: segmentation fault   Tsjerk Wassenaar
      • [gmx-users] pdb2gmx: segmentation fault   Kwee Hong
• [gmx-users] Doubts regarding Simulation box   kavya at rishi.serc.iisc.ernet.in
• [gmx-users] Doubts regarding Simulation box   Tsjerk Wassenaar
• [gmx-users] Minimization-single or double precision   kavya at rishi.serc.iisc.ernet.in
• [gmx-users] Energy minimization - single/double precision   Kavyashree M
• [gmx-users] Doubts regarding Simulation box   Kavyashree M
• [gmx-users] Melting Temperatue   ifat shub
• [gmx-users] galactose   nishap.patel at utoronto.ca
• [gmx-users] creating mdrun_mpi with cmake   chris.neale at utoronto.ca
  • [gmx-users] creating mdrun_mpi with cmake   Justin A. Lemkul
• [gmx-users] problem when calculating the solvation free energy of ARG in water using PME.   chris.neale at utoronto.ca
• [gmx-users] Melting Temperatue   chris.neale at utoronto.ca
• [gmx-users] galactose   nishap.patel at utoronto.ca
  • [gmx-users] galactose   Justin A. Lemkul
    • [gmx-users] galactose   nishap.patel at utoronto.ca
      • [gmx-users] galactose   Justin A. Lemkul
• [gmx-users] creating mdrun_mpi with cmake   chris.neale at utoronto.ca
• [gmx-users] Installing multiple versions of GROMACS together? - program suffix   devicerandom
  • [gmx-users] Installing multiple versions of GROMACS together? - program suffix   Justin A. Lemkul
    • [gmx-users] Installing multiple versions of GROMACS together? - program suffix   devicerandom
      • [gmx-users] Installing multiple versions of GROMACS together? - program suffix   Justin A. Lemkul
      • [gmx-users] Installing multiple versions of GROMACS together? - program suffix   devicerandom
      • [gmx-users] Installing multiple versions of GROMACS together? - program suffix   Justin A. Lemkul
      • [gmx-users] Installing multiple versions of GROMACS together? - program suffix   Mark Abraham
• [gmx-users] TZD Tautomers   Nancy
  • [gmx-users] TZD Tautomers   Tsjerk Wassenaar
• [gmx-users] Error when execute g_energy - the message: not recognized, maybe different CPU?   Rodrigo Faccioli
  • [gmx-users] Error when execute g_energy - the message: not recognized, maybe different CPU?   Justin A. Lemkul
  • [gmx-users] Error when execute g_energy - the message: not recognized, maybe different CPU?   Mark Abraham
    • [gmx-users] Error when execute g_energy - the message: not recognized, maybe different CPU?   Rodrigo Faccioli
      • [gmx-users] Error when execute g_energy - the message: not recognized, maybe different CPU?   Justin A. Lemkul
• [gmx-users] number of cores with a large prime factor   chris.neale at utoronto.ca
• [gmx-users] Re: pdb2gmx: segmentation fault   Kwee Hong
  • [gmx-users] Re: pdb2gmx: segmentation fault   Mark Abraham
    • [gmx-users] Re: pdb2gmx: segmentation fault   Kwee Hong
      • [gmx-users] Re: pdb2gmx: segmentation fault   Justin A. Lemkul
      • [gmx-users] Re: pdb2gmx: segmentation fault   Kwee Hong
      • [gmx-users] Re: pdb2gmx: segmentation fault   Justin A. Lemkul
      • [gmx-users] Re: pdb2gmx: segmentation fault   Kwee Hong
      • [gmx-users] Re: pdb2gmx: segmentation fault   Mark Abraham
      • [gmx-users] Re: pdb2gmx: segmentation fault   Kwee Hong
      • [gmx-users] Re: pdb2gmx: segmentation fault   Justin A. Lemkul
• [gmx-users] number of cores with a large prime factor   Mark Abraham
• [gmx-users] Doubts regarding Simulation box - Thanks   Kavyashree M
  • [gmx-users] Doubts regarding Simulation box - Thanks   Tsjerk Wassenaar
• [gmx-users] Density of the box   Kavyashree M
• [gmx-users] Doubts regarding Simulation box - Thanks   Mark Abraham
  • [gmx-users] Doubts regarding Simulation box - Thanks   Kavyashree M
• [gmx-users] g_analyze with multiple sets   Rebeca García Fandiño
  • [gmx-users] g_analyze with multiple sets   Justin A. Lemkul
    • [gmx-users] g_analyze with multiple sets   Rebeca García Fandiño
• [gmx-users] segmentation fault   leila separdar
  • [gmx-users] segmentation fault   Mark Abraham
    • [gmx-users] segmentation fault   leila separdar
• [gmx-users] g_covar   shahrbanoo karbalaee
  • [gmx-users] g_covar   Tsjerk Wassenaar
• [gmx-users] CNT   trevor brown
  • [gmx-users] CNT   Justin A. Lemkul
• [gmx-users] grompp error   bharat gupta
  • [gmx-users] grompp error   Mark Abraham
• [gmx-users] segmentation error   leila separdar
  • [gmx-users] segmentation error   Mark Abraham
• [gmx-users] Installing Gromacs with Cygwin   Mr Bernard Ramos
  • [gmx-users] Installing Gromacs with Cygwin   Mark Abraham
• [gmx-users] problem with LINCS   Thomas Koller
  • [gmx-users] problem with LINCS   Justin A. Lemkul
• [gmx-users] ACPYPE download   Jianhui Tian
  • [gmx-users] ACPYPE download   Mark Abraham
• [gmx-users] Position restraint problem   Marcelo Silva
  • [gmx-users] Position restraint problem   Justin A. Lemkul
    • [gmx-users] Position restraint problem   Marcelo Silva
      • [gmx-users] Position restraint problem   Mark Abraham
  • [gmx-users] Position restraint problem   Mark Abraham
• [gmx-users] ACPYPE   Kerrigan, John
• [gmx-users] Viscosity calculations   Xiaohu Li
  • [gmx-users] Viscosity calculations   Justin A. Lemkul
• [gmx-users] Energy minimization   bharat gupta
  • [gmx-users] Energy minimization   Amit Choubey
    • [gmx-users] Energy minimization   bharat gupta
      • [gmx-users] Energy minimization   Amit Choubey
      • [gmx-users] Energy minimization   bharat gupta
      • [gmx-users] Energy minimization   Amit Choubey
      • [gmx-users] Energy minimization   Justin A. Lemkul
• [gmx-users] Re : genion   bharat gupta
  • [gmx-users] Re : genion   Erik Marklund
  • [gmx-users] Re : genion   Mark Abraham
• [gmx-users] Problem with GB and coarse-grain forcefield   Benjamin Bouvier
  • [gmx-users] Problem with GB and coarse-grain forcefield   Mark Abraham
• [gmx-users] Non integral charges   Kavyashree M
  • [gmx-users] Non integral charges   Erik Marklund
  • [gmx-users] Non integral charges   Justin A. Lemkul
    • [gmx-users] Non integral charges   Kavyashree M
• [gmx-users] Secondary structure loss in implicit solvent simulations   K. Singhal
  • [gmx-users] Secondary structure loss in implicit solvent simulations   Michael Shirts
  • [gmx-users] Re: Secondary structure loss in implicit solvent simulations   K. Singhal
    • [gmx-users] Re: Secondary structure loss in implicit solvent simulations   Justin A. Lemkul
      • [gmx-users] Re: Secondary structure loss in implicit solvent simulations   Michael Shirts
• [gmx-users] Re: Non integral charges   Vitaly Chaban
  • [gmx-users] Re: Non integral charges   Justin A. Lemkul
    • [gmx-users] Re: Non integral charges   Vitaly Chaban
• [gmx-users] gromacs 4.5.3 with threads instead of MPI   Arnau Cordomi
  • [gmx-users] gromacs 4.5.3 with threads instead of MPI   Carsten Kutzner
• [gmx-users] galactose bond stretch   nishap.patel at utoronto.ca
  • [gmx-users] galactose bond stretch   Justin A. Lemkul
    • [gmx-users] galactose bond stretch   nishap.patel at utoronto.ca
      • [gmx-users] galactose bond stretch   Thomas Piggot
      • [gmx-users] galactose bond stretch   Justin A. Lemkul
      • [gmx-users] galactose bond stretch   Thomas Piggot
      • [gmx-users] Constraint pulling   Gavin Melaugh
• [gmx-users] ACPYPE download   Jianhui Tian
  • [gmx-users] ACPYPE download   Justin A. Lemkul
• [gmx-users] Re:Viscosity calculations   Xiaohu Li
  • [gmx-users] Re:Viscosity calculations   Justin A. Lemkul
• [gmx-users] TZD Tautomer Distribution   Nancy
  • [gmx-users] TZD Tautomer Distribution   Tsjerk Wassenaar
• [gmx-users] spurious forces while doing pulling simulation   Amit Choubey
  • [gmx-users] spurious forces while doing pulling simulation   Justin A. Lemkul
    • [gmx-users] spurious forces while doing pulling simulation   Amit Choubey
      • [gmx-users] spurious forces while doing pulling simulation   Amit Choubey
      • [gmx-users] spurious forces while doing pulling simulation   Justin A. Lemkul
      • [gmx-users] spurious forces while doing pulling simulation   Amit Choubey
      • [gmx-users] spurious forces while doing pulling simulation   Justin A. Lemkul
      • [gmx-users] spurious forces while doing pulling simulation   Amit Choubey
      • [gmx-users] spurious forces while doing pulling simulation   Justin A. Lemkul
• [gmx-users] Segmentation Fault in EM   TJ Mustard
  • [gmx-users] Segmentation Fault in EM   Justin A. Lemkul
    • [gmx-users] Segmentation Fault in EM   TJ Mustard
      • [gmx-users] Segmentation Fault in EM   Justin A. Lemkul
• [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
  • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   Justin A. Lemkul
    • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   Justin A. Lemkul
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   Mark Abraham
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   Mark Abraham
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   Mark Abraham
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   Justin A. Lemkul
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   Marcelo Silva
      • [gmx-users] 1-4 interaction between X and Y at distance 1.804 which is larger than 1-4 table size 1.800 nm.   TJ Mustard
• [gmx-users] COMETS 2011 - 2nd International Track on Collaborative Modeling and Simulation - Call for Papers   Daniele Gianni
• [gmx-users] ACPYPE download   Jianhui Tian
• [gmx-users] CNT   trevor brown
  • [gmx-users] CNT   Mark Abraham
• [gmx-users] N-acetyl-d-glucosamine parameters   Renato Freitas
  • [gmx-users] N-acetyl-d-glucosamine parameters   Thomas Piggot
• [gmx-users] table-extension in mdp ?!   jojo J
  • [gmx-users] table-extension in mdp ?!   TJ Mustard
• [gmx-users] eNERGY mINIMIZATION   bharat gupta
  • [gmx-users] eNERGY mINIMIZATION   Mark Abraham
    • [gmx-users] eNERGY mINIMIZATION   bharat gupta
      • [gmx-users] eNERGY mINIMIZATION   Mark Abraham
• [gmx-users] g_covar   shahrbanoo karbalaee
• [gmx-users] Equilibration   bharat gupta
  • [gmx-users] Equilibration   Justin A. Lemkul
• [gmx-users] potential energy value   ahmet yıldırım
  • [gmx-users] potential energy value   Justin A. Lemkul
  • [gmx-users] potential energy value   Mark Abraham
• [gmx-users] error calculation via bootstrapping method in umbrella sampling simulation   Ozge Engin
• [gmx-users] preparation_solvation_box   shahid nayeem
  • [gmx-users] preparation_solvation_box   Mark Abraham
• [gmx-users] solvation box for say 50mM chaps solution   ABEL Stephane 175950
• [gmx-users] Dell PowerEdge M710 with Intel Xeon 5667 processor   Maryam Hamzehee
  • [gmx-users] Dell PowerEdge M710 with Intel Xeon 5667 processor   Szilárd Páll
    • [gmx-users] Dell PowerEdge M710 with Intel Xeon 5667 processor   Maryam Hamzehee
      • [gmx-users] Dell PowerEdge M710 with Intel Xeon 5667 processor   Mark Abraham
      • [gmx-users] Dell PowerEdge M710 with Intel Xeon 5667 processor   Szilárd Páll
• [gmx-users] GROMOS96 topology for small molecule   C.Y. Chang
  • [gmx-users] GROMOS96 topology for small molecule   Justin A. Lemkul
    • [gmx-users] GROMOS96 topology for small molecule   mohsen ramezanpour
      • [gmx-users] GROMOS96 topology for small molecule   C.Y. Chang
• [gmx-users] Fourier transformation of dipole autocorrelation function   Nilesh Dhumal
  • [gmx-users] Fourier transformation of dipole autocorrelation function   Mark Abraham
    • [gmx-users] Fourier transformation of dipole autocorrelation function   Nilesh Dhumal
      • [gmx-users] Fourier transformation of dipole autocorrelation function   Mark Abraham
      • [gmx-users] Fourier transformation of dipole autocorrelation function   Florian Dommert
• [gmx-users] Re:Re: CNT   trevor brown
  • [gmx-users] Re:Re: CNT   Justin A. Lemkul
• [gmx-users] Heme group in the forcefield gromos53a6   Tanos Celmar Costa Franca
  • [gmx-users] Heme group in the forcefield gromos53a6   Justin A. Lemkul
• [gmx-users] CNT   trevor brown
  • [gmx-users] CNT   Justin A. Lemkul
• [gmx-users] grompp error   trevor brown
  • [gmx-users] grompp error   Justin A. Lemkul
• [gmx-users] Gromacs 4 cannot reach Fmax in energy minimisation when version 3 did   Cara Kreck
  • [gmx-users] Gromacs 4 cannot reach Fmax in energy minimisation when version 3 did   Mark Abraham
  • [gmx-users] Gromacs 4 cannot reach Fmax in energy minimisation when version 3 did   Gavin Melaugh
    • [gmx-users] Gromacs 4 cannot reach Fmax in energy minimisation when version 3 did   Justin A. Lemkul
• [gmx-users] Convert residue coordinates to dihedral angles   Adam Bin Idu Jion
• [gmx-users] Convert residue coordinates to dihedral angles   Mark Abraham
• [gmx-users] PRODRG server   mohsen ramezanpour
  • [gmx-users] PRODRG server   Justin A. Lemkul
• [gmx-users] the final structure   ahmet yıldırım
  • [gmx-users] the final structure   Rodrigo Faccioli
  • [gmx-users] the final structure   Mark Abraham
  • [gmx-users] the final structure   Justin A. Lemkul
• [gmx-users] Re: Problem in Disulfide Bond   parthiban at ncbs.res.in
  • [gmx-users] Re: Problem in Disulfide Bond   Justin A. Lemkul
    • [gmx-users] Pull code   Gavin Melaugh
• [gmx-users] Help with the heme group in forcefield gromos53a6   Tanos Franca
  • [gmx-users] Help with the heme group in forcefield gromos53a6   Justin A. Lemkul
• [gmx-users] Re: Contstraints = all-angles   David van der Spoel
• [gmx-users] Important: Bugs in NEMD calculation   Xiaohu Li
  • [gmx-users] Important: Bugs in NEMD calculation   David van der Spoel
    • [gmx-users] Important: Bugs in NEMD calculation   Berk Hess
      • [gmx-users] Important: Bugs in NEMD calculation   David van der Spoel
      • [gmx-users] Important: Bugs in NEMD calculation   Berk Hess
• [gmx-users] RE: Important: Bugs in NEMD calculation   Xiaohu Li
  • [gmx-users] RE: Important: Bugs in NEMD calculation   Berk Hess
• [gmx-users] CNT   trevor brown
  • [gmx-users] CNT   Justin A. Lemkul
• [gmx-users] Re: gmx-users Digest, Vol 81, Issue 130   Xiaohu Li
• [gmx-users] RE: Important: Bugs in NEMD calculation   Xiaohu Li
• [gmx-users] CNT   trevor brown
  • [gmx-users] CNT   Mark Abraham
• [gmx-users] CNT   Dallas Warren
• [gmx-users] (no subject)   aish at rri.res.in
• [gmx-users] (no subject)   Mark Abraham
• [gmx-users] running a crashed run   bharat gupta
  • [gmx-users] running a crashed run   Mark Abraham
    • [gmx-users] running a crashed run   bharat gupta
• [gmx-users] running a crashed run   Mark Abraham
• [gmx-users] Re: gmx-users Digest, Vol 81, Issue 126   parthiban at ncbs.res.in
• [gmx-users] Re: Problem in Disulfide Bond   parthiban at ncbs.res.in
  • [gmx-users] Re: Problem in Disulfide Bond   Oliver Grant
• [gmx-users] glycam amber in gromacs mixed 1-4 scaling glycam06 fudgeQQ pairs coulomb amberports   Oliver Grant
• [gmx-users] Re: Problem in Disulfide Bond   Mark Abraham
• [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   maria goranovic
• [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   Mark Abraham
  • [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   maria goranovic
    • [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   Justin A. Lemkul
      • [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   maria goranovic
      • [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   Justin A. Lemkul
      • [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   maria goranovic
      • [gmx-users] non-integer charge in a protein setup using pdb2gmx AND slow simulations in vacuum v. 4.5.3   Justin A. Lemkul
• [gmx-users] Mesa GLproto stuff UBUNTU   Sergio Manzetti
• [gmx-users] avoiding bad contact in continutation run   Adwait Mevada
• [gmx-users] Re: Problem in Disulfide Bond   parthiban at ncbs.res.in
  • [gmx-users] Re: Problem in Disulfide Bond   Justin A. Lemkul
• [gmx-users] Re: Problem in Disulfide Bond   Mark Abraham
  • [gmx-users] Re: Problem in Disulfide Bond   Oliver Grant
• [gmx-users] 4 x Opteron 12-core or 4 x Xeon 8-core ?   David McGiven
  • [gmx-users] 4 x Opteron 12-core or 4 x Xeon 8-core ?   Carsten Kutzner
• [gmx-users] avoiding bad contact in continutation run   Mark Abraham
• [gmx-users] Re: avoiding bad contact in continutation run (Mark Abraham)   Adwait Mevada
  • [gmx-users] Re: avoiding bad contact in continutation run (Mark Abraham)   Justin A. Lemkul
• [gmx-users] QM/MM viewer (was: CNT)   Justin A. Lemkul
• [gmx-users] QM/MM viewer   Sergio Manzetti
• [gmx-users] different versions- different output!   jojo J
• [gmx-users] 4 x Opteron 12-core or 4 x Xeon 8-core ?   David McGiven
  • [gmx-users] 4 x Opteron 12-core or 4 x Xeon 8-core ?   Berk Hess
• [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Qin Qiao
  • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Justin A. Lemkul
    • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Qin Qiao
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Justin A. Lemkul
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Qin Qiao
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Justin A. Lemkul
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Qin Qiao
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Justin A. Lemkul
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Qin Qiao
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Justin A. Lemkul
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Qin Qiao
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Justin A. Lemkul
      • [gmx-users] How to install a new Forcefield in Gromacs 4.5.3   Mark Abraham
• [gmx-users] Re: gmx-users Digest, Vol 81, Issue 140   Adwait Mevada
  • [gmx-users] avoiding bad contact in continutation run   Justin A. Lemkul
• [gmx-users] Fwd: Viewing results from Groamcs QM/MM sims   Sergio Manzetti
• [gmx-users] How to create an rtp file for a lipid?   "Dr. Ramón Garduño-Juárez"
  • [gmx-users] How to create an rtp file for a lipid?   Justin A. Lemkul
• [gmx-users] Box size and potential energy calculation   Christian Mötzing
  • [gmx-users] Box size and potential energy calculation   Mark Abraham
    • [gmx-users] Box size and potential energy calculation   Christian Mötzing
      • [gmx-users] Box size and potential energy calculation   Mark Abraham
      • [gmx-users] Box size and potential energy calculation   Christian Mötzing
      • [gmx-users] Box size and potential energy calculation   Tim Harder
• [gmx-users] (no subject)   trevor brown
  • [gmx-users] (no subject)   Justin A. Lemkul
• [gmx-users] Inaccurate pressure readings   Denny Frost
  • [gmx-users] Inaccurate pressure readings   Justin A. Lemkul
    • [gmx-users] Inaccurate pressure readings   Denny Frost
      • [gmx-users] Inaccurate pressure readings   Warren Gallin
      • [gmx-users] Inaccurate pressure readings   Justin A. Lemkul
      • [gmx-users] Inaccurate pressure readings   Denny Frost
      • [gmx-users] Inaccurate pressure readings   Justin A. Lemkul
• [gmx-users] Inaccurate pressure readings   Dallas Warren
  • [gmx-users] Inaccurate pressure readings   Denny Frost
• [gmx-users] Inaccurate pressure readings   Dallas Warren
  • [gmx-users] Inaccurate pressure readings   Denny Frost
    • [gmx-users] Inaccurate pressure readings   Mark Abraham
• [gmx-users] Problem with using topolbuild1_3.tgz   Sweta Iyer
  • [gmx-users] Problem with using topolbuild1_3.tgz   Bruce D. Ray
• [gmx-users] Running a crashed run   bharat gupta
  • [gmx-users] Running a crashed run   Justin A. Lemkul
• [gmx-users] Regarding g_analyze   bharat gupta
  • [gmx-users] Regarding g_analyze   Justin A. Lemkul
• [gmx-users] Visualizing the simulation in VMD   bharat gupta
  • [gmx-users] Visualizing the simulation in VMD   Justin A. Lemkul
    • [gmx-users] Visualizing the simulation in VMD   bharat gupta
      • [gmx-users] Visualizing the simulation in VMD   Justin A. Lemkul
• [gmx-users] Regarding g_analyze   Justin A. Lemkul
  • [gmx-users] Regarding g_analyze   bharat gupta
    • [gmx-users] Regarding g_analyze   Justin A. Lemkul
• [gmx-users] Visualizing the simulation in VMD   Dallas Warren
• [gmx-users] Re: avoiding bad contact in continutation run (Mark Abraham)   Adwait Mevada
  • [gmx-users] Re: avoiding bad contact in continutation run (Mark Abraham)   Mark Abraham
• [gmx-users] RE: RMSD calculation of a specific region   bharat gupta
  • [gmx-users] Fwd: RMSD calculation of a specific region   bharat gupta
    • [gmx-users] Fwd: RMSD calculation of a specific region   Justin A. Lemkul
      • [gmx-users] Fwd: RMSD calculation of a specific region   bharat gupta
      • [gmx-users] Fwd: RMSD calculation of a specific region   Justin A. Lemkul
• [gmx-users] charge group radii larger that rlist-rvdw   Kavyashree M
  • [gmx-users] charge group radii larger that rlist-rvdw   Justin A. Lemkul
    • [gmx-users] charge group radii larger that rlist-rvdw   Kavyashree M
      • [gmx-users] charge group radii larger that rlist-rvdw   Justin A. Lemkul
      • [gmx-users] charge group radii larger that rlist-rvdw   Kavyashree M
      • [gmx-users] charge group radii larger that rlist-rvdw   Justin A. Lemkul
      • [gmx-users] charge group radii larger that rlist-rvdw   Kavyashree M
      • [gmx-users] charge group radii larger that rlist-rvdw   Justin A. Lemkul
      • [gmx-users] charge group radii larger that rlist-rvdw   Kavyashree M
      • [gmx-users] charge group radii larger that rlist-rvdw   Justin A. Lemkul
      • [gmx-users] charge group radii larger that rlist-rvdw   Kavyashree M
      • [gmx-users] charge group radii larger that rlist-rvdw   Justin A. Lemkul
• [gmx-users] decorrelation function   Thomas Koller
• [gmx-users] fatal error   ahmet yıldırım
  • [gmx-users] fatal error   Justin A. Lemkul
    • [gmx-users] fatal error   ahmet yıldırım
      • [gmx-users] fatal error   Justin A. Lemkul
      • [gmx-users] fatal error   ahmet yıldırım
      • [gmx-users] fatal error   Justin A. Lemkul
      • [gmx-users] fatal error   ahmet yıldırım
      • [gmx-users] fatal error   Justin A. Lemkul
• [gmx-users] charge group radii larger that rlist-rvdw   Kavyashree M
• [gmx-users] Error in generating DPPC using grompp   shobana visolingam
  • [gmx-users] Error in generating DPPC using grompp   Justin A. Lemkul
• [gmx-users] DSPC all atom .itp file   Anirban Ghosh
  • [gmx-users] DSPC all atom .itp file   Anirban Ghosh
• [gmx-users] OPLS implicit solvent problems   francesca.stanzione at unina.it
  • [gmx-users] OPLS implicit solvent problems   Per Larsson
• [gmx-users] (no subject)   francesca.stanzione at unina.it
• [gmx-users] CG to FG transformation error   Anirban Ghosh
  • [gmx-users] CG to FG transformation error   Martti Louhivuori
• [gmx-users] RNA with small molecule   Muslum Ilgu
  • [gmx-users] RNA with small molecule   Justin A. Lemkul
    • [gmx-users] RNA with small molecule   Muslum Ilgu
      • [gmx-users] RNA with small molecule   Justin A. Lemkul
• [gmx-users] Re: Problem with using topolbuild1_3.tgz   Sweta Iyer
  • [gmx-users] Re: Problem with using topolbuild1_3.tgz   Bruce D. Ray
• [gmx-users] doubts on g_confrms output   Kwee Hong
  • [gmx-users] doubts on g_confrms output   Tsjerk Wassenaar
• [gmx-users] doubts on running em in vacuo   Kwee Hong
• [gmx-users] PRODRG server   mohsen ramezanpour
  • [gmx-users] PRODRG server   Justin A. Lemkul
    • [gmx-users] PRODRG server   mohsen ramezanpour
      • [gmx-users] PRODRG server   Justin A. Lemkul
      • [gmx-users] PRODRG server   mohsen ramezanpour
      • [gmx-users] PRODRG server   Mark Abraham
      • [gmx-users] PRODRG server   Justin A. Lemkul
      • [gmx-users] PRODRG server   mohsen ramezanpour
      • [gmx-users] PRODRG server   Justin A. Lemkul
• [gmx-users] fatal error   Justin A. Lemkul
  • [gmx-users] fatal error   ahmet yıldırım
• [gmx-users] Swiss pdb viewer   ahmet yıldırım
  • [gmx-users] Swiss pdb viewer   Justin A. Lemkul
• [gmx-users] using Berger Lipids in gromacs 4.5.3   NG HUI WEN
  • [gmx-users] using Berger Lipids in gromacs 4.5.3   NG HUI WEN
    • [gmx-users] using Berger Lipids in gromacs 4.5.3   Justin A. Lemkul
      • [gmx-users] using Berger Lipids in gromacs 4.5.3   NG HUI WEN
      • [gmx-users] using Berger Lipids in gromacs 4.5.3   Justin A. Lemkul
      • [gmx-users] using Berger Lipids in gromacs 4.5.3   NG HUI WEN
      • [gmx-users] using Berger Lipids in gromacs 4.5.3   Justin A. Lemkul
• [gmx-users] inconsistent energies CPU vs GPU   zhaowh at mail.ustc.edu.cn
• [gmx-users] adding of a new force field in gromacs 4.5.1   mina Madah
  • [gmx-users] adding of a new force field in gromacs 4.5.1   Justin A. Lemkul
• [gmx-users] transmembrane protein simulation   Mohana lakshmi
  • [gmx-users] transmembrane protein simulation   Itamar Kass
    • [gmx-users] transmembrane protein simulation   Mohana lakshmi
  • [gmx-users] transmembrane protein simulation   Krzysztof Mlynarczyk
    • [gmx-users] transmembrane protein simulation   Mohana lakshmi
• [gmx-users] Query for RMSD   Archana Sonawani
• [gmx-users] Query for RMSD   Mark Abraham
• [gmx-users] adding of a new force field in gromacs 4.5.1   mina Madah
  • [gmx-users] adding of a new force field in gromacs 4.5.1   Mark Abraham
• [gmx-users] Gromos96 manual and user guid   mohsen ramezanpour
  • [gmx-users] Gromos96 manual and user guid   Justin A. Lemkul
• [gmx-users] pdb2gmx error_ resall.c, line: 321   udaya kiran
  • [gmx-users] pdb2gmx error_ resall.c, line: 321   Mark Abraham
• [gmx-users] pdb2gmx error_ resall.c, line: 321   udaya kiran
• [gmx-users] Error in generating DPPC using grompp   Justin A. Lemkul
• [gmx-users] Atomtype HW not found when using grompp for energy minimization   Parul tew
  • [gmx-users] Atomtype HW not found when using grompp for energy minimization   Justin A. Lemkul
• [gmx-users] cannot rename checkpoint file   ram bio
  • [gmx-users] cannot rename checkpoint file   Justin A. Lemkul
• [gmx-users] amber96 RB dihedrals in GMX 4.0 and 4.5   Badi' Abdul-Wahid
  • [gmx-users] amber96 RB dihedrals in GMX 4.0 and 4.5   Mark Abraham
• [gmx-users] GPU gets faster with more molecules in system   Christian Mötzing
  • [gmx-users] GPU gets faster with more molecules in system   Mark Abraham
• [gmx-users] mdrun_mpi executable not found   Justin Kat
  • [gmx-users] mdrun_mpi executable not found   Justin A. Lemkul
    • [gmx-users] mdrun_mpi executable not found   Justin Kat
      • [gmx-users] mdrun_mpi executable not found   Justin A. Lemkul
      • [gmx-users] mdrun_mpi executable not found   Justin Kat
      • [gmx-users] mdrun_mpi executable not found   Mark Abraham
• [gmx-users] using Berger Lipids in gromacs 4.5.3   Justin A. Lemkul
  • [gmx-users] using Berger Lipids in gromacs 4.5.3   NG HUI WEN
• [gmx-users] Need help troubleshooting an mdrun-gpu error message!   Solomon Berman
  • [gmx-users] Need help troubleshooting an mdrun-gpu error message!   Szilárd Páll
• [gmx-users] total charge of the system   ahmet yıldırım
• [gmx-users] total charge of the system   Mark Abraham
  • [gmx-users] total charge of the system   ahmet yıldırım
• [gmx-users] segmentation fault while running eneconv   Anna Marabotti
  • [gmx-users] segmentation fault while running eneconv   Justin A. Lemkul
• [gmx-users] total charge of the system   Mark Abraham
• Antw: Re: [gmx-users] total charge of the system   Emanuel Peter
  • [gmx-users] total charge of the system   ahmet yıldırım
• [gmx-users] Re: Secondary structure loss in implicit solvent simulations   K. Singhal
  • [gmx-users] Re: Secondary structure loss in implicit solvent simulations   Michael Shirts
• [gmx-users] total charge of the system   Mark Abraham
  • [gmx-users] total charge of the system   ahmet yıldırım
    • [gmx-users] total charge of the system   Mark Abraham
• [gmx-users] Can not open file: run.xtc   ahmet yıldırım
  • [gmx-users] Can not open file: run.xtc   Tsjerk Wassenaar
    • [gmx-users] Can not open file: run.xtc   ahmet yıldırım
• [gmx-users] V-rescale thermostat, PME, Estimate for the relative computational load of the PME mesh part: 0.97   gromacs
  • [gmx-users] V-rescale thermostat, PME, Estimate for the relative computational load of the PME mesh part: 0.97   Justin A. Lemkul
    • [gmx-users] V-rescale thermostat, PME, Estimate for the relative computational load of the PME mesh part: 0.97   Mark Abraham
• [gmx-users] compiling error in tools   Jennifer Williams
  • [gmx-users] compiling error in tools   Justin A. Lemkul
• [gmx-users] dipole moment   Olga Ivchenko
  • [gmx-users] dipole moment   David van der Spoel
    • [gmx-users] dipole moment   Olga Ivchenko
      • [gmx-users] dipole moment   David van der Spoel
      • [gmx-users] dipole moment   Olga Ivchenko
• [gmx-users] Umbrella Sampling for a single molecule   Sai Pooja
  • [gmx-users] Umbrella Sampling for a single molecule   Justin A. Lemkul
• [gmx-users] Re: segmentation fault while running eneconv   anna.marabotti at isa.cnr.it
  • [gmx-users] Re: segmentation fault while running eneconv   Justin A. Lemkul
• [gmx-users] Two machines, same job, one fails   TJ Mustard
  • [gmx-users] Two machines, same job, one fails   Mark Abraham
    • [gmx-users] Two machines, same job, one fails   TJ Mustard
      • [gmx-users] Two machines, same job, one fails   Justin A. Lemkul
      • [gmx-users] Two machines, same job, one fails   TJ Mustard
      • [gmx-users] Two machines, same job, one fails   Justin A. Lemkul
      • [gmx-users] Two machines, same job, one fails   TJ Mustard
      • [gmx-users] Two machines, same job, one fails   Mark Abraham
      • [gmx-users] Two machines, same job, one fails   TJ Mustard
• [gmx-users] More than one settle type   Shalabh
• [gmx-users] nstcomm nstcalcenergy defeats the purpose of nstcalcenergy   ahmet yıldırım
  • [gmx-users] nstcomm nstcalcenergy defeats the purpose of nstcalcenergy   Mark Abraham
• [gmx-users] (no subject)   trevor brown
  • [gmx-users] (no subject)   Justin A. Lemkul
• [gmx-users] Fw:Re:gmx-users Digest, Vol 81, Issue 192; PME, Estimate for the relative   gromacs
  • [gmx-users] V-rescale thermostat, PME, Estimate for the relative computational load of the PME mesh part: 0.97   Justin A. Lemkul
• [gmx-users] More than one settle type   Mark Abraham
• [gmx-users] QMMM with ORCA   Xiaohu Li
  • [gmx-users] QMMM with ORCA   Christoph Riplinger
    • [gmx-users] QMMM with ORCA   Xiaohu Li
      • [gmx-users] Re: QMMM with ORCA   Gerrit Groenhof
      • [gmx-users] Re: QMMM with ORCA   Xiaohu Li
• [gmx-users] RE: stopping a simulation in between without crashing any trajectories   bharat gupta
  • [gmx-users] RE: stopping a simulation in between without crashing any trajectories   Mark Abraham
• [gmx-users] Radial distribution function in gromacs   Sergio Manzetti
• [gmx-users] validation of ligand parametrization   mohsen ramezanpour
  • [gmx-users] validation of ligand parametrization   Justin A. Lemkul
    • [gmx-users] validation of ligand parametrization   mohsen ramezanpour
      • [gmx-users] validation of ligand parametrization   Mark Abraham
      • [gmx-users] validation of ligand parametrization   mohsen ramezanpour
• [gmx-users] decorrelation function   Thomas Koller
• [gmx-users] Re: Re: segmentation fault while running eneconv   Anna Marabotti
  • [gmx-users] Re: Re: segmentation fault while running eneconv   Justin A. Lemkul
• [gmx-users] grompp charge group radii larger than rlist   "Dr. Ramón Garduño-Juárez"
  • [gmx-users] grompp charge group radii larger than rlist   Justin A. Lemkul
  • [gmx-users] grompp charge group radii larger than rlist   Thomas Piggot
• [gmx-users] mdrun_mpi executable not found   Justin Kat
  • [gmx-users] mdrun_mpi executable not found   Justin Kat
• [gmx-users] mdrun_mpi executable not found   Justin A. Lemkul
• [gmx-users] Re: mdrun_mpi executable not found   Xiaohu Li
• [gmx-users] GBSA implicit model and atom type   anna
• [gmx-users]Fwd: GROMACS and GBSA implicit water   Bruce D. Ray
• [gmx-users] Re: QMMM with ORCA   Xiaohu Li
• [gmx-users] truncated LJ potential   Makoto Yoneya
  • [gmx-users] truncated LJ potential   Mark Abraham
• [gmx-users] solvation_box   shahid nayeem
• [gmx-users] can i run .tpr using Gromacs 4.5.3(has parallel) in cluster computer; the .tpr was created using gromacs 4.0.7 in my desktop (without parallel)   gromacs
  • [gmx-users] can i run .tpr using Gromacs 4.5.3(has parallel) in cluster computer; the .tpr was created using gromacs 4.0.7 in my desktop (without parallel)   Roland Schulz
• [gmx-users] Re: change in the secondary structure after simulation   bharat gupta
  • [gmx-users] Re: change in the secondary structure after simulation   Mark Abraham
    • [gmx-users] Re: change in the secondary structure after simulation   bharat gupta
• [gmx-users] solvation_box   Mark Abraham
  • [gmx-users] solvation_box   shahid nayeem
    • [gmx-users] solvation_box   shahid nayeem
• [gmx-users] Gromacs + GPU: Problems running dppc example in ftp://ftp.gromacs.org/pub/benchmarks/gmxbench-3.0.tar.gz   Camilo Andrés Jimenez Cruz
  • [gmx-users] Re: Gromacs + GPU: Problems running dppc example in ftp://ftp.gromacs.org/pub/benchmarks/gmxbench-3.0.tar.gz   Camilo Andrés Jimenez Cruz
    • [gmx-users] Re: Gromacs + GPU: Problems running dppc example in ftp://ftp.gromacs.org/pub/benchmarks/gmxbench-3.0.tar.gz   Carsten Kutzner
• [gmx-users] ZN2+ qtot 1.233e-06 ?   Chih-Ying Lin
• [gmx-users] ZN2+ qtot 1.233e-06 ?   Mark Abraham
• [gmx-users] Re: change in the secondary structure after simulation   Mark Abraham
  • [gmx-users] Re: change in the secondary structure after simulation   Justin A. Lemkul
    • [gmx-users] Re: change in the secondary structure after simulation   bharat gupta
      • [gmx-users] Re: change in the secondary structure after simulation   Justin A. Lemkul
      • [gmx-users] Re: change in the secondary structure after simulation   bharat gupta
      • [gmx-users] Re: change in the secondary structure after simulation   Mark Abraham
      • [gmx-users] Re: change in the secondary structure after simulation   bharat gupta
      • [gmx-users] Re: change in the secondary structure after simulation   Justin A. Lemkul
• [gmx-users] ZN2+ qtot 1.233e-06 ?   Chih-Ying Lin
  • [gmx-users] ZN2+ qtot 1.233e-06 ?   Mark Abraham
• [gmx-users] gro to itp   trevor brown
  • [gmx-users] gro to itp   Justin A. Lemkul
• [gmx-users] proton proton exchange and constant pH simulations.   Olga Ivchenko
  • [gmx-users] proton proton exchange and constant pH simulations.   Mark Abraham
    • [gmx-users] proton proton exchange and constant pH simulations.   Miguel Machuqueiro
    • [gmx-users] proton proton exchange and constant pH simulations.   Olga Ivchenko
      • [gmx-users] proton proton exchange and constant pH simulations.   Justin A. Lemkul
• [gmx-users] remove all waters from the pdb file   ahmet yıldırım
  • [gmx-users] remove all waters from the pdb file   Justin A. Lemkul
    • [gmx-users] remove all waters from the pdb file   Tsjerk Wassenaar
      • [gmx-users] remove all waters from the pdb file   ahmet yıldırım
• [gmx-users] Re: change in the secondary structure after simulation   bharat gupta
• [gmx-users] Re: change in the secondary structure after simulation   Justin A. Lemkul
  • [gmx-users] Re: change in the secondary structure after simulation   Thomas Piggot
• [gmx-users] solvation_box_preparation   shahid nayeem
  • [gmx-users] solvation_box_preparation   Justin A. Lemkul
    • [gmx-users] solvation_box_preparation   shahid nayeem
      • [gmx-users] solvation_box_preparation   Mark Abraham
      • [gmx-users] solvation_box_preparation   shahid nayeem
      • [gmx-users] solvation_box_preparation   Justin A. Lemkul
• [gmx-users] Using g_select to detect water pores in a bilayer   Manuel Nuno Melo
  • [gmx-users] Using g_select to detect water pores in a bilayer   Teemu Murtola
• [gmx-users] protein movement in lipid bilayer during simulation   ram bio
  • [gmx-users] protein movement in lipid bilayer during simulation   Justin A. Lemkul
    • [gmx-users] protein movement in lipid bilayer during simulation   ram bio
• [gmx-users] Center of mass motion removal for partial filled PBC box   WU Yanbin
  • [gmx-users] Center of mass motion removal for partial filled PBC box   Mark Abraham
• [gmx-users] Eigenvectors   Yao Yao
• [gmx-users] Eigenvectors   Yao Yao
• [gmx-users] Slow Runs   Denny Frost
• [gmx-users] Slow Runs   Dallas Warren
  • [gmx-users] Slow Runs   Denny Frost
    • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Erik Marklund
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Erik Marklund
      • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Justin A. Lemkul
      • [gmx-users] Slow Runs   Denny Frost
      • [gmx-users] Slow Runs   Justin A. Lemkul
• [gmx-users] Slow Runs   Chris Neale
  • [gmx-users] Slow Runs   Jussi Lehtola
• [gmx-users] Eigenvectors   Yao Yao
  • [gmx-users] Eigenvectors   Tsjerk Wassenaar
• [gmx-users] Output error mpirun/mdrun_mpi   Justin Kat
  • [gmx-users] Output error mpirun/mdrun_mpi   Justin A. Lemkul
• [gmx-users] nstcomm set to 10   NG HUI WEN
• [gmx-users] g_mindist clarification   Chandan Choudhury
  • [gmx-users] g_mindist clarification   Justin A. Lemkul
• [gmx-users] truncated LJ potential   Makoto Yoneya
  • [gmx-users] truncated LJ potential   Mark Abraham
• [gmx-users] Simulation time losses with REMD   Mark Abraham
  • [gmx-users] Simulation time losses with REMD   Martyn Winn
  • [gmx-users] Simulation time losses with REMD   Mark Abraham
    • [gmx-users] Simulation time losses with REMD   martyn.winn at stfc.ac.uk
      • [gmx-users] Simulation time losses with REMD   Mark Abraham
• [gmx-users] truncated LJ potential   Makoto Yoneya
• [gmx-users] local pressure calcuation for Gromacs-4.5   Jianguo Li
• [gmx-users] how to define the box when protein protruding out of the lipid bi layer membrane   Parul tew
  • [gmx-users] how to define the box when protein protruding out of the lipid bi layer membrane   Justin A. Lemkul
• [gmx-users] invacuo simulation   Kwee Hong
  • [gmx-users] invacuo simulation   Mark Abraham
    • [gmx-users] invacuo simulation   Kwee Hong
• [gmx-users] Re : Change in secondary structure during the npt equilibration   bharat gupta
• [gmx-users] change in secondary structure after npt equilibration   bharat gupta
  • [gmx-users] sum of largest charge group radii   Gavin Melaugh
    • [gmx-users] sum of largest charge group radii   Justin A. Lemkul
      • [gmx-users] sum of largest charge group radii   Gavin Melaugh
      • [gmx-users] sum of largest charge group radii   Justin A. Lemkul
      • [gmx-users] sum of largest charge group radii   Gavin Melaugh
      • [gmx-users] sum of largest charge group radii   Justin A. Lemkul
      • [gmx-users] sum of largest charge group radii   Gavin Melaugh
      • [gmx-users] sum of largest charge group radii   Justin A. Lemkul
  • [gmx-users] change in secondary structure after npt equilibration   Justin A. Lemkul
    • [gmx-users] change in secondary structure after npt equilibration   sonali dhindwal
      • [gmx-users] change in secondary structure after npt equilibration   Justin A. Lemkul
      • [gmx-users] change in secondary structure after npt equilibration   bharat gupta
      • [gmx-users] change in secondary structure after npt equilibration   Justin A. Lemkul
      • [gmx-users] change in secondary structure after npt equilibration   bharat gupta
      • [gmx-users] change in secondary structure after npt equilibration   Justin A. Lemkul
• [gmx-users] mdrun with append option   Sai Pooja
  • [gmx-users] mdrun with append option   Mark Abraham
    • [gmx-users] mdrun with append option   Sai Pooja
      • [gmx-users] mdrun with append option   Sai Pooja
      • [gmx-users] mdrun with append option   Justin A. Lemkul
      • [gmx-users] mdrun with append option   Justin A. Lemkul
      • [gmx-users] mdrun with append option   Mark Abraham
      • [gmx-users] mdrun with append option   Sai Pooja
• [gmx-users] Fourier transformation of dipole autocorrelation function in matlab   Nilesh Dhumal
• [gmx-users] Slow Runs   Justin A. Lemkul
• [gmx-users] energy minimization of a charged system in vacuum   Matthew Chan
  • [gmx-users] energy minimization of a charged system in vacuum   Mark Abraham
    • [gmx-users] energy minimization of a charged system in vacuum   Matt Chan
      • [gmx-users] energy minimization of a charged system in vacuum   ms
      • [gmx-users] energy minimization of a charged system in vacuum   David van der Spoel
      • [gmx-users] energy minimization of a charged system in vacuum   ms
      • [gmx-users] energy minimization of a charged system in vacuum   David van der Spoel
• [gmx-users] Slow Runs   Justin A. Lemkul
• [gmx-users] divergent energy minimization results from identical starting system   Matthew Chan
  • [gmx-users] divergent energy minimization results from identical starting system   Roland Schulz
    • [gmx-users] divergent energy minimization results from identical starting system   Matt Chan
• [gmx-users] Re: gmx-users Digest, Vol 81, Issue 204   Thomas Koller
  • [gmx-users] Re: gmx-users Digest, Vol 81, Issue 204   Mark Abraham
• [gmx-users] rdf range   Thomas Koller
• [gmx-users] Missing Amino Acids   simon sham
  • [gmx-users] Missing Amino Acids   Justin A. Lemkul
• [gmx-users] Questions concerning autocorrealtion function   Thomas Koller
• [gmx-users] specific heat   leila separdar
  • [gmx-users] specific heat   David van der Spoel
• [gmx-users] PME parameter in GROMACS   aldi asmadi
  • [gmx-users] PME parameter in GROMACS   Florian Dommert
• [gmx-users] ngmx doesnot work; CH3-CH2-OH   gromacs
  • [gmx-users] ngmx doesnot work; CH3-CH2-OH   Justin A. Lemkul
    • [gmx-users] ngmx doesnot work; CH3-CH2-OH   Mark Abraham
  • [gmx-users] ngmx doesnot work; CH3-CH2-OH   Mark Abraham
• [gmx-users] luck   Mr Bernard Ramos
  • [gmx-users] luck   Justin A. Lemkul
    • [gmx-users] luck   Mr Bernard Ramos
      • [gmx-users] luck   Justin A. Lemkul
      • [gmx-users] luck   Mr Bernard Ramos
    • [gmx-users] luck   Mr Bernard Ramos
      • [gmx-users] luck   Justin A. Lemkul
• [gmx-users] Monitoring the water movement during simulation   bharat gupta
  • [gmx-users] Monitoring the water movement during simulation   Mark Abraham
    • [gmx-users] Monitoring the water movement during simulation   bharat gupta
      • Fwd: [gmx-users] Monitoring the water movement during simulation   bharat gupta
• [gmx-users] 4.5.3 Installation under Cygwin   toma0052 at umn.edu
• [gmx-users] 4.5.3 Installation under Cygwin   Mark Abraham
  • [gmx-users] 4.5.3 Installation under Cygwin   toma0052 at umn.edu
• Fwd: [gmx-users] Monitoring the water movement during simulation   Mark Abraham
  • Fwd: [gmx-users] Monitoring the water movement during simulation   bharat gupta
    • Fwd: [gmx-users] Monitoring the water movement during simulation   bharat gupta
• [gmx-users] Fwd: GROMACS user: error with pdb2gmx   Mark Abraham
• Fwd: [gmx-users] Monitoring the water movement during simulation   Mark Abraham
  • Fwd: [gmx-users] Monitoring the water movement during simulation   bharat gupta
    • Fwd: [gmx-users] Monitoring the water movement during simulation   bharat gupta
• Fwd: [gmx-users] Monitoring the water movement during simulation   Mark Abraham
  • Fwd: [gmx-users] Monitoring the water movement during simulation   bharat gupta
    • Fwd: [gmx-users] Monitoring the water movement during simulation   bharat gupta
• [gmx-users] Count the number of contacts between two proteins + pbc artifacts   ifat shub
  • [gmx-users] Count the number of contacts between two proteins + pbc artifacts   Tsjerk Wassenaar
• [gmx-users] General MD question   lloyd riggs
• [gmx-users] hbond constraint   Denny Frost
• [gmx-users] mdrun with append option   Sai Pooja
• [gmx-users] Source Code for Lennard Jones Interaction   Apoorv Kalyankar

Last message date: Mon Jan 31 23:52:36 CET 2011
Archived on: Thu Nov 14 12:10:09 CET 2013

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...