[gmx-users] pdb2gmx: segmentation fault

Kwee Hong jestan1985 at yahoo.com
Thu Jan 13 09:50:35 CET 2011

Hi Tsjerk,

Ya, it happened with other ff, too.
My command line is pdb2gmx -ignh -f Sur.pdb
i've browsed through the pdb file and it looks ok...


From: Tsjerk Wassenaar <tsjerkw at gmail.com>
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Sent: Thursday, January 13, 2011 15:31:35
Subject: Re: [gmx-users] pdb2gmx: segmentation fault

Hi Joyce,
Can you post the command line? Does it also happen with other force fields? Is 
there something notable about the pdb file?
On Jan 13, 2011 7:48 AM, "Kwee Hong" <jestan1985 at yahoo.com> wrote:
>Hi Mark,
>I tried v 4.0.7 and 4.5.1. Both experiencing the same situation.
>The file is actually saved as pdb file from autodock output using pymol.
From: Mark Abraham <mark.abraham at anu.edu.au>
>To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>Sent: Thursday, January 13, 2011 13:43:47
>Subject: Re: [gmx-users] pdb2gmx: segmentation  fault
>On 01/13/11, Kwee Hong <jestan1985 at yahoo.com> wrote: > > Hi, > >  I was trying 
>to generate topolo...
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