[gmx-users] pdb2gmx: segmentation fault

[Kwee Hong]

Hi Tsjerk,

Ya, it happened with other ff, too.
My command line is pdb2gmx -ignh -f Sur.pdb
i've browsed through the pdb file and it looks ok...

joyce






________________________________
From: Tsjerk Wassenaar <tsjerkw at gmail.com>
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Sent: Thursday, January 13, 2011 15:31:35
Subject: Re: [gmx-users] pdb2gmx: segmentation fault


Hi Joyce,
Can you post the command line? Does it also happen with other force fields? Is 
there something notable about the pdb file?
Cheers,
Tsjerk
On Jan 13, 2011 7:48 AM, "Kwee Hong" <jestan1985 at yahoo.com> wrote:
>
>
>Hi Mark,
>
>I tried v 4.0.7 and 4.5.1. Both experiencing the same situation.
>The file is actually saved as pdb file from autodock output using pymol.
>
>Joyce
>
>
>
>
________________________________
From: Mark Abraham <mark.abraham at anu.edu.au>
>To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>Sent: Thursday, January 13, 2011 13:43:47
>Subject: Re: [gmx-users] pdb2gmx: segmentation  fault
>
>On 01/13/11, Kwee Hong <jestan1985 at yahoo.com> wrote: > > Hi, > >  I was trying 
>to generate topolo...
>
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