[gmx-users] g_covar

[Tsjerk Wassenaar]

Hi Karbalee,

It says : nanometer squared.

Cheers,

Tsjerk

PS. Many of us are not Justin... :p

On Sat, Jan 15, 2011 at 5:33 PM, shahrbanoo karbalaee
<shahrbanoo at gmail.com> wrote:
> Dear Justin
> Hi,I want to use PCA for compare fluctuations two  peptides with  13
> aa. I  use this command g_covar
> g_covar #NAME?  run2.tpr        #NAME?  run2.xtc        #NAME?  eigenvaluesbackbone.xvg #NAME?  eigenvectorsbackbone.trr        #NAME?  covarbackbon.xpm
>
> and get the some of data :  title       Eigenvalues of the covariance matrix
> xaxis   label   Eigenvector index
> yaxis   label   (nm\S2\N)
>
> would you  please tell me about  Yaxis.  What is  meaning of  (nm/s2/n)?
>
> Best
> Karbalaee
>
>
>
> sh-karbalaee
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-- 
Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands