[gmx-users] g_covar

Tsjerk Wassenaar tsjerkw at gmail.com
Sat Jan 15 19:56:25 CET 2011

Hi Karbalee,

It says : nanometer squared.



PS. Many of us are not Justin... :p

On Sat, Jan 15, 2011 at 5:33 PM, shahrbanoo karbalaee
<shahrbanoo at gmail.com> wrote:
> Dear Justin
> Hi,I want to use PCA for compare fluctuations two  peptides with  13
> aa. I  use this command g_covar
> g_covar #NAME?  run2.tpr        #NAME?  run2.xtc        #NAME?  eigenvaluesbackbone.xvg #NAME?  eigenvectorsbackbone.trr        #NAME?  covarbackbon.xpm
> and get the some of data :  title       Eigenvalues of the covariance matrix
> xaxis   label   Eigenvector index
> yaxis   label   (nm\S2\N)
> would you  please tell me about  Yaxis.  What is  meaning of  (nm/s2/n)?
> Best
> Karbalaee
> sh-karbalaee
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands

More information about the gromacs.org_gmx-users mailing list