[gmx-users] Segmentation Fault in EM

[Justin A. Lemkul]

TJ Mustard wrote:
> 
> 
> Hi all,
> 
>  
> 
> I have been running alot of simulations on protein ligand interactions, 
> and my settings/setup/mdp files worked great for one system. Then when 
> we moved to a larger and more complicated system we started getting 
> mdrun segmentation faults during "steep" energy minimization.  This 
> happens on our cluster and on our iMacs.
> 
>  
> 
> Any help would be appreciated. Also I can attach my mdp files.
> 
>  

There are a whole host of things that could be going wrong.  Without 
substantially more information, including even more (like a thorough description 
of what these systems are and the exact commands of what worked before), then 
you won't get any useful advice.

-Justin

> 
> Thank you
> 
>  
> 
> TJ Mustard
> Email: mustardt at onid.orst.edu
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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