[gmx-users] CNT
trevor brown
trevorbrown34 at gmail.com
Wed Jan 19 00:39:15 CET 2011
Dear friends,
I have the following topology for system including CNT+peptide+water
When I grompp for minimization, I got the following error. How can I solve
it?
best wishes
trevor
WARNING 1 [file ffbonded.itp, line 2703]:
Overriding Bond parameters.
old: 0.151 292880 0.151 292880
new: C C 1 0.14210 478900
ERROR 1 [file ffbonded.itp, line 2709]:
Not enough parameters
-------------------------------------------------------
Program grompp, VERSION 4.5.3
Source code file: topio.c, line: 675
Fatal error:
Syntax error - File forcefield.itp, line 20
Last line read:
'1 3 yes 0.5 0.5'
Found a second defaults directive.
TOPOLOGY
; Include forcefield parameters
#include "oplsaa.ff/forcefield.itp"
; Include topology for CNT
#include "cnt.itp"
; Include topology for UW1
#include "uw1.itp"
; Include water topology
#include "oplsaa.ff/spc.itp"
[ system ]
; Name
Protein and CNT in water
[ molecules ]
; Compound #mols
Protein 1
CNT 1
SOL 4019
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110119/82f0292b/attachment.html>
More information about the gromacs.org_gmx-users
mailing list