[gmx-users] Visualizing the simulation in VMD

Dallas Warren Dallas.Warren at monash.edu
Fri Jan 21 04:45:22 CET 2011

This is more of a question you should be directing to the VMD emailing


How many frames does your .trr file contain?


Use gmxcheck to see what the .trr file contains.


Catch ya,

Dr. Dallas Warren

Medicinal Chemistry and Drug Action

Monash Institute of Pharmaceutical Sciences, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at monash.edu

+61 3 9903 9304
When the only tool you own is a hammer, every problem begins to resemble
a nail. 


From: gmx-users-bounces at gromacs.org
[mailto:gmx-users-bounces at gromacs.org] On Behalf Of bharat gupta
Sent: Friday, 21 January 2011 2:42 PM
To: Discussion list for GROMACS users
Subject: [gmx-users] Visualizing the simulation in VMD


I loaded the .gro file generated after pdb2gmx command in vmd and then I
loaded the .trr file into that molecule but it shows frame 1 vol 0 in
VMD and when I click the play button on the toolbar the frames doesn't
move ... can anybody tell me how to play the simula tion in VMD ?? or
where am i going wrong

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