[gmx-users] Visualizing the simulation in VMD

Justin A. Lemkul jalemkul at vt.edu
Fri Jan 21 04:59:17 CET 2011



bharat gupta wrote:
> 
> 
> After running the simulation I checked the trajectory in using ngmx in 
> some other system .. and it was working .. since I need to do some more 
> analysis during trajectory run on my protein I thought of running into 
> VMD and I used the file .trr after completng the simulation .
>  
> 

Then you probably just loaded it wrong.  Refer to a VMD tutorial.

-Justin

> -- 
> Bharat
> Ph.D. Candidate
> Room No. : 7202A, 2nd Floor
> Biomolecular Engineering Laboratory
> Division of Chemical Engineering and Polymer Science
> Pusan National University
> Busan -609735
> South Korea
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> Mobile no. - 010-5818-3680
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> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================



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