[gmx-users] grompp charge group radii larger than rlist
"Dr. Ramón Garduño-Juárez"
ramon at fis.unam.mx
Wed Jan 26 18:38:04 CET 2011
Dear All:
I am going through the Justin Lemku tutorial for KALP15 in DPPC. I have
reached step three, when I try to generate a trp file for DPPC only by
means of :
grompp -f minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr
I get the following warning:
WARNING 1 [file minim.mdp]:
The sum of the two largest charge group radii (10.651017) is larger than
rlist (1.200000)
which causes grompp to be terminated.
Fatal error:
Too many warnings (1), grompp terminated.
If you are sure all warnings are harmless, use the -maxwarn option.
I do not know if I should ignore this warning and use -maxwarn, or if I
must modify the mdp file.
By the way, I have assigned values from 1.0 to 1.4 to rlist, rcoulomb
and rvdw, but I get the same warning all the time...
Any idea as to what causes this problem?
Much obliged for your help.
Cheers,
Ramon
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