[gmx-users] Monitoring the water movement during simulation

[bharat gupta]

Hi,

I am completed a 3 ns simulation of a 230 aa protein .. Now I want to check
whether the water is entering the proteins and through which side of the
protein .. Since the whole protein is surrounded by water I don't know how
this can be done .. is there any command to check .. also I have tried doing
it in VMD but there I am not able to do so ??

Pls help

-- 
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
Division of Chemical Engineering and Polymer Science
Pusan National University
Busan -609735
South Korea
Lab phone no. - +82-51-510-3680, +82-51-583-8343
Mobile no. - 010-5818-3680
E-mail : monu46010 at yahoo.com
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110130/c125bd79/attachment.html>